Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g270 ATGCAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCATGGACAATCTGAATGTTCTGAGCAGACCTCTAGCGATGGTCCTGTGTTGGAAGAATTTATCCCAATAAAAAAGACGTCTGATGATGAAGATGAACAACAATCTCACCAGCCTAATGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGGCCCCGTCTGCGGCAACCAGTTCTACGGCTGAAACGGCCACCGGATGCAGCAGTGGAAGCAGAAAAGAAGAGAAAGAAGGGCAGTCTCAGAGAAAGGCCAGGCGGTGTTGGTCGCCGGAGTTGCATAGGCGGTTCTTGCATGCCCTTCAACAGCTTGGTGGTTCTCATGTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGGTTGCACACAAGAAGACCAAACCCGGCCATTCAACATAATGGGAACCCACAAGCACCCCAATTTGTAGTGGTGGGAGGCATATGGGTTCCACCGCCGGAGTATACAGCAGTGGCTGCAACTACATCATCAGGAGAAGCAACCGGAGTCACCACCGCCAATGGAATTTATGCACCGGTGGCTTCAGTGCCACCTTCACACCCACAGGGGTCAACTCAAAGGCAACAACCGATGAAGCCCAAAAAGTCACAATCCGAAGAAAGGGGCAGCCACAGTGAAGGGGGTGTTCAGTCTAATTCCCCAGCCACGTCTTCCTCCACCCATACCACCACAACTTCCCCTGTGTTTTAA 1071 49.11 MQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQSECSEQTSSDGPVLEEFIPIKKTSDDEDEQQSHQPNDNKDKNNDKSGKKSDWLRSVQLWNQTPDPPVKEDTPKKIPSMEVKKNGGAFHPFKRDKAVGTNPTSAPSAATSSTAETATGCSSGSRKEEKEGQSQRKARRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVPPPEYTAVAATTSSGEATGVTTANGIYAPVASVPPSHPQGSTQRQQPMKPKKSQSEERGSHSEGGVQSNSPATSSSTHTTTTSPVF* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2781374 2783587 + Vvi1g270 Vvi1g270 769470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g270 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 243 IPR006447 GO:0003677
Vvi1g270 356 MobiDBLite consensus disorder prediction 174 191 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 152 173 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 75 191 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 75 105 - -
Vvi1g270 356 Pfam Myb-like DNA-binding domain 190 241 IPR001005 -
Vvi1g270 356 PANTHER TRANSCRIPTION FACTOR HHO2 1 351 - -
Vvi1g270 356 Gene3D - 187 245 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 298 356 - -
Vvi1g270 356 Coils Coil 4 24 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 330 356 - -
Vvi1g270 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 245 IPR017930 -
Vvi1g270 356 MobiDBLite consensus disorder prediction 305 319 - -
Vvi1g270 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 351 IPR044787 GO:0003700|GO:0006355
Vvi1g270 356 SUPERFAMILY Homeodomain-like 186 246 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g270 - - - vvi:100257723 660.218
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14495 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Vvi TF