Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g270 ATGCAGAGGTGTCATGATTATATCGAAGCATTGGAGGAGGAGCGTCGAAAGATTCAGGTCTTTCAACGTGAACTTCCTCTTTGTTTAGAGCTTGTAAGCCAAGCGATTGAGTCATGCAGACAACAGATGTCGGGGACGACCCAGGAATATTTTCATGGACAATCTGAATGTTCTGAGCAGACCTCTAGCGATGGTCCTGTGTTGGAAGAATTTATCCCAATAAAAAAGACGTCTGATGATGAAGATGAACAACAATCTCACCAGCCTAATGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGGCCCCGTCTGCGGCAACCAGTTCTACGGCTGAAACGGCCACCGGATGCAGCAGTGGAAGCAGAAAAGAAGAGAAAGAAGGGCAGTCTCAGAGAAAGGCCAGGCGGTGTTGGTCGCCGGAGTTGCATAGGCGGTTCTTGCATGCCCTTCAACAGCTTGGTGGTTCTCATGTTGCTACCCCAAAGCAGATCAGGGAACTGATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGGTTGCACACAAGAAGACCAAACCCGGCCATTCAACATAATGGGAACCCACAAGCACCCCAATTTGTAGTGGTGGGAGGCATATGGGTTCCACCGCCGGAGTATACAGCAGTGGCTGCAACTACATCATCAGGAGAAGCAACCGGAGTCACCACCGCCAATGGAATTTATGCACCGGTGGCTTCAGTGCCACCTTCACACCCACAGGGGTCAACTCAAAGGCAACAACCGATGAAGCCCAAAAAGTCACAATCCGAAGAAAGGGGCAGCCACAGTGAAGGGGGTGTTCAGTCTAATTCCCCAGCCACGTCTTCCTCCACCCATACCACCACAACTTCCCCTGTGTTTTAA 1071 49.11 MQRCHDYIEALEEERRKIQVFQRELPLCLELVSQAIESCRQQMSGTTQEYFHGQSECSEQTSSDGPVLEEFIPIKKTSDDEDEQQSHQPNDNKDKNNDKSGKKSDWLRSVQLWNQTPDPPVKEDTPKKIPSMEVKKNGGAFHPFKRDKAVGTNPTSAPSAATSSTAETATGCSSGSRKEEKEGQSQRKARRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPNPAIQHNGNPQAPQFVVVGGIWVPPPEYTAVAATTSSGEATGVTTANGIYAPVASVPPSHPQGSTQRQQPMKPKKSQSEERGSHSEGGVQSNSPATSSSTHTTTTSPVF* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2781374 2783587 + Vvi1g270 Vvi1g270 769470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g270 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 243 IPR006447 GO:0003677
Vvi1g270 356 MobiDBLite consensus disorder prediction 174 191 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 152 173 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 75 191 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 75 105 - -
Vvi1g270 356 Pfam Myb-like DNA-binding domain 190 241 IPR001005 -
Vvi1g270 356 PANTHER TRANSCRIPTION FACTOR HHO2 1 351 - -
Vvi1g270 356 Gene3D - 187 245 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 298 356 - -
Vvi1g270 356 Coils Coil 4 24 - -
Vvi1g270 356 MobiDBLite consensus disorder prediction 330 356 - -
Vvi1g270 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 245 IPR017930 -
Vvi1g270 356 MobiDBLite consensus disorder prediction 305 319 - -
Vvi1g270 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 351 IPR044787 GO:0003700|GO:0006355
Vvi1g270 356 SUPERFAMILY Homeodomain-like 186 246 IPR009057 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14495 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g270 - - vvi:100257723 660.218