Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g279 ATGCAAAGCTTCAAAGCAGCTCCCACCGCCTCCGATATAGGCGACGAAAGTAGCCGAAATCAAACGCGTTTTCCGGATCTTGGAGAGCTTGAACAGTCCGCTGCGTTTCATCACGACGATGCTGTTGATTTAAGTTCAAGCGCCATGTTTCGCTTGAAGTCGGGCAATGTAGGTGTTGTTTCTCCGTTACATTTTGGAGGCTTGAACACGAACATTGGCCCGTCGGACATGGTTTCAACATCAGGAACAGGAGTGGTGGACACAGGGCAGCTCATGTTCTCAAAGGGGACGGCTGAGACGGCGACGGCGACGGTAGCTTCGTTGGGAAATGGGCACTTTGAGAACTGGGGTGAGTCTGGCATGGGTGACAACAGCCAACAGACTGACACTTCCACAGATGTTGACACTGATGATAAAAACCAGTATCATGGAGTCCAACATGGAGCACTTGTAGCTGTGGATTCCATGGACCAATCCAAGGGGAAAACTGGAGACCAGAAGACACTTCGTAGGCTGGCTCAGAATCGAGAGGCTGCAAGGAAGAGTCGTCTGAGGAAGAAAGCATATGTCCAGCAGCTGGAGTGTAGCCAACTCAAGCTTACACAGTTAGAGCAAGAGCTTCAACGAGCACGCCAGCAGGGTGTTTTTATTGCGACTGGATTTTCTGGGGATCAGAGTCATTCCATGGGTGGAAATGGGGCTTTAGCATTTGACATGGATTATGCTCGCTGGCTTGATGAACATCAGCGGCTGATCAATGACCTGAGATCAGCTGTAAATTCTCATGTGGGGGATAATGAACTACGCATTCTTGTTGATGGTGTAATGGCACATTATGATGAAATATTCAGGCTAAAGAGCATGGGGGCAAAATCTGATGTGTTTCACATGCTTTCTGGCATGTGGAAGACGCCTGCAGAGAGATGTTTCATGTGGTTGGGTGGATTCCGATCATCTGAACTTCTGAAGATACTTGGGAACCAACTTGAACCTTTAACAGATCAGCAGCTGATGGGCATATGTAATCTACAACAGTCCTCACAGCAAGCTGAGGATGCATTATCACAAGGAATGGAAGCACTACAACAATCTCTTGTAGAAACACTTTCCTCTAATTCTCTGGGTCCTGCTGGTTCGGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACCCTCGAAAATTTCCTTCACCAGGCTGACCTCCTGAGGCAGCAGACTTTGCAACAAATGCATCGAATTTTGACCACACGCCAAGCAGCTCGTGCCCTTCTGGTCATCAGTGATTACATGTCTCGGCTGCGAGCTCTCAGCTCTTTATGGTTAGCACGCCCTAGGGACTGA 1362 48.68 MQSFKAAPTASDIGDESSRNQTRFPDLGELEQSAAFHHDDAVDLSSSAMFRLKSGNVGVVSPLHFGGLNTNIGPSDMVSTSGTGVVDTGQLMFSKGTAETATATVASLGNGHFENWGESGMGDNSQQTDTSTDVDTDDKNQYHGVQHGALVAVDSMDQSKGKTGDQKTLRRLAQNREAARKSRLRKKAYVQQLECSQLKLTQLEQELQRARQQGVFIATGFSGDQSHSMGGNGALAFDMDYARWLDEHQRLINDLRSAVNSHVGDNELRILVDGVMAHYDEIFRLKSMGAKSDVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNQLEPLTDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVETLSSNSLGPAGSGNVADYMGQMAIAMGKLATLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYMSRLRALSSLWLARPRD* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2941265 2946321 + Vvi1g279 Vvi1g279 769479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g279 453 CDD bZIP_HBP1b-like 167 219 - -
Vvi1g279 453 SMART brlzneu 163 234 IPR004827 GO:0003700|GO:0006355
Vvi1g279 453 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 36 453 - -
Vvi1g279 453 Coils Coil 186 213 - -
Vvi1g279 453 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 170 185 IPR004827 GO:0003700|GO:0006355
Vvi1g279 453 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 209 IPR004827 GO:0003700|GO:0006355
Vvi1g279 453 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g279 453 PANTHER TRANSCRIPTION FACTOR TGA9 36 453 - -
Vvi1g279 453 ProSiteProfiles DOG1 domain profile. 234 450 IPR025422 GO:0006351|GO:0043565
Vvi1g279 453 Gene3D - 166 214 - -
Vvi1g279 453 Pfam Seed dormancy control 252 325 IPR025422 GO:0006351|GO:0043565
Vvi1g279 453 SUPERFAMILY Leucine zipper domain 167 210 IPR046347 GO:0003700|GO:0006355
Vvi1g279 453 Pfam bZIP transcription factor 167 206 IPR004827 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14496 PF14144 DOG1 3.70E-31 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g279 K14431 - vvi:100249239 856.284