Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g28 ATGGGTCGAGGAGTCAGCAGTGGTGGAGGACAGAGTTCATTGGGCTACCTTTTTGGGAGTGGAGAGGCTCCCAAACCGGCGCCAAACAATGCCCCAGCTTCTTCTAGCGAAGGACCAGCTGCTAATACTGGGGCTTCCACCAAGCCCATTGCTGCAGCTCAACCAACAGATGTTACTAAGCAGATACCTGCAGGTATCAATAGTAACACTGCAAACAACTACCACCGGGCGGATGGCCAGAACTGTGGCAACTTCATCACAGGTCGTCCCTCAACTAAGGTCCACTCTGCACCTGGTGGTGGATCATCTTTGGATTACCTCTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGCTAGTGGTGGTGGTGCTAGTGGTGGTGGTGGTAAATGA 396 54.04 MGRGVSSGGGQSSLGYLFGSGEAPKPAPNNAPASSSEGPAANTGASTKPIAAAQPTDVTKQIPAGINSNTANNYHRADGQNCGNFITGRPSTKVHSAPGGGSSLDYLFGGGGGGGGGGGASGGGASGGGGK* 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 390749 395260 - Vvi1g28 Vvi1g28 769228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g28 131 MobiDBLite consensus disorder prediction 109 131 - -
Vvi1g28 131 MobiDBLite consensus disorder prediction 1 75 - -
Vvi1g28 131 PANTHER PROTEIN SPIRAL1-LIKE 2 1 112 - -
Vvi1g28 131 PANTHER SPR1 1 112 IPR039613 GO:0043622
Vvi1g28 131 MobiDBLite consensus disorder prediction 29 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g28 K18635 SPR1; protein SPIRAL1 and related proteins - vvi:100257592 181.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g28 Vvi17g455 ECH
Vvi1g28 Vvi14g1022 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g28 Blo01g00455 Blo16g01083 Bda01g02124 Bda11g01173 Bpe13g01371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0523 Cone9ag0536 . . . . . . . Bda11g01173 . Bpe02g02313 Bma01g00125 . . . . . . . . . Cpe07g00090 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002868 2 2 1 1 2 2 3 1 1 1 1 2 2 1 2 2 2 2 3 1 1 2 1 1 2 2 1 2 3 5 54