Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g283 ATGGCTGCCATCACCATGGATCCGAGTTTGAGCCGACAAGTTGGCAAAGACAGCCACCAGCACGGCGCTGTAGTTGAGGAAATCCATGGGCTCATCAGAGTGTACAAAGATGGACACGTGGAAAGACCCCAGATCGTTCCATGTGTGACAAGCCTGTTGCCTTCGGACCTGGGCGTGACTTGTGGAGACATAGTGATTCACAAGTTAACAAACATTTGGGCACCCGCTTGGACTGTATCCGGGGCCAGTGAATGGGCAAGCGAAGCCACAGCCTTGAAGCCGTTGGTTTTCAAGGGGACAATTCTAATACAGCCATTCTTCGGCGGAGAGGCACGCACTCATTCTGAGAAGCAGATGGTATCTCCCTCAGTGCTGAGCTTAACGGCCTCTGATACATACTGGAGGTTGTCCTTACCATATGGTGCAAATCGTGACCATCCATGGTGCAACCCAATGTCAAAGGGGTCCATTAAATTGTTGGAGTTGAGGCTCTTACCCACCATGGTGTGCATTTCAGAGATGGACATATTGAGAGACAGAAATTTAGAGTTTTGCAGTGCTTTGGCTAGTGCGGGTAAGAGGGTGGAGCATGTTGTGTACAAAGGTGTAGGGCATGCATTCCAGATTCTGAATAAGTCACCCCTCGCACAAACTCGTACCCTAGAAATGTTGTCACATATCAGTTCCTTCATTACTAGATGGCCCCTGGACCCTCCTACTCATCATGATTGTCGTTGA 738 49.46 MAAITMDPSLSRQVGKDSHQHGAVVEEIHGLIRVYKDGHVERPQIVPCVTSLLPSDLGVTCGDIVIHKLTNIWAPAWTVSGASEWASEATALKPLVFKGTILIQPFFGGEARTHSEKQMVSPSVLSLTASDTYWRLSLPYGANRDHPWCNPMSKGSIKLLELRLLPTMVCISEMDILRDRNLEFCSALASAGKRVEHVVYKGVGHAFQILNKSPLAQTRTLEMLSHISSFITRWPLDPPTHHDCR* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2958066 2959131 + Vvi1g283 Vvi1g283 769483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g283 245 SUPERFAMILY alpha/beta-Hydrolases 90 232 IPR029058 -
Vvi1g283 245 PANTHER CARBOXYLESTERASE 6-RELATED 10 77 - -
Vvi1g283 245 PANTHER CARBOXYLESTERASE 6-RELATED 92 232 - -
Vvi1g283 245 Gene3D alpha/beta hydrolase 76 234 IPR029058 -
Vvi1g283 245 PANTHER ARYLACETAMIDE DEACETYLASE 10 77 - -
Vvi1g283 245 PANTHER ARYLACETAMIDE DEACETYLASE 92 232 - -
Vvi1g283 245 Pfam alpha/beta hydrolase fold 93 208 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g283 - - - vvi:100261259 330.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g283 Vvi14g898 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g283 Blo01g00493 . Bda01g02084 . . . . . . Cmo18g01048 . Cma18g01034 . Car18g00958 Sed06g1870 Cpe09g00285 . Bhi07g01350 Tan04g0885 Cmetu10g1313 . Hepe01g1210 . . Cla05g02317 Cam05g2489 Cec05g2513 Cco05g2555 Clacu05g2484 Cmu05g2347 Cre05g2463 . . Cone6ag0460 . Lsi04g00275 Csa05g02594 Chy10g01131 Cme10g00277 . . . . . . Bma01g00162 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007197 1 4 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 1 37