Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g284 ATGGCAACTCATTTTTTCCTTCCACTTTCAAATCCTAGTTGGAACTTGGAATCATTACTCTCTGCGGAGCGGACGAGGATAGCAGGCCTTCGAACTGCAGACAGCCGGCGGGAAAGAATTTCAAGCGTGAGAAACGTTTTAGATACAATGGCTATGGTGGACGAGCCACTTTATCCAATCGCTGTTCTGATAGATGAGTTGAAAAATGCTGACATCCAGCTGCGGTTGAACTCAATTCGTCGGCTATCCACAATTGCACGTGCACTGGGGGAGGAGCGAACCCGAAATGAATTGATCCCATTTCTTAGTGAGAACAATGATGATGATGATGAGGTGCTTCTTGCAATGACTGAAGAATTGGGAGTGTTCATTCCTTATGTTGGGGGACTGGAGCATGCCTGTGTTTTGCTACCACCTTTGGAAACTCTTTGCACTGTGGAGGAAACCCGTGTGAGGGATAAAGCCGTGGAGTCTTTGTGTAGAATTGGTTCTCAAATGAAGGAAAATGATTTGATTAACTGGTTTATTCCTTTGGTGAAGAGACTGGCATCTGGTGAATGGTTTACTGCTCGAGTTTCTGCATGTGGACTGTTTCATATTGCTTACCCAAGTGCCCCAGAGATGTTAAAGATGGAGTTGCGGGCAATATACAGTCAATTGTGTCAAGATGACATGCCCATGGTGAGGAGATCTGCCGCATCAAGCCTGTGGAAGTTTTCTGCAACAGTTGAGCCTGTTCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAAGTTATTAGAGCCCCAGGAATGCATTGCACGTATTCTCCCTGTTATTATCAGCTTTTCTCAGGACAGATCTTGGCGTGTTCGCTACATGGTTGCAGATCAATTATATGAGCTTTGTCATGCTGTAGGGCCTGAAGCTACCAGAACGGACTTGGTTCCCGCTTATATGCGGTTACTTCGAGATAATGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGGAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTTTTAATGGGAATGGCTCCCGTCTTAGGAAAGGATGCAACAATTGATCAACTTCTTCCAATTTTTCTTTCTCTTTTGAAGGATGACTTTCCTGATGTACGACTAAATATCATTAGCAAGCTTGATCAAATAAATCAGGTTATTGGAACTGATCTATTGTCCCAATCCCTATTACCGGCCATTGTTGAGCTTGCAGAGGATAGACATTGGAGGGTTCGACTTGCAATAATAGAGTATATTCCTTTGTTGGCAAGTCAGTTGGGTATAAAGTTTTTTGATGATGAGCTTGGTGCTCTTTGCATGCAGTGGCTACAGGATAAGGTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAGAATTTGGTCCTGACTGGGCAATGCAGCACTTAATTCCACAGGTCTTGGAGATGATTAACAATTCACACTATTTGTATCGGATGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATTCGAAACTGTTGCCGGTGGTCATCAGTGCATCCAATGACAGGGTGCCCAATGTCAAATTCAATGTTGCCAAGGTGCTGCAGTCCCTGATTCCTATAGTTGATCATTCTGTGGTGGAAAAGACGATCCGACCGTGTTTGGTTGAGCTTAGTGAGGACCCAGATGTAGATGTCCGCTTCTCTGCCAACCAAGCAATCCATGTGATTGATCACGTCATGATGTCTAGCTAG 1911 44.17 MATHFFLPLSNPSWNLESLLSAERTRIAGLRTADSRRERISSVRNVLDTMAMVDEPLYPIAVLIDELKNADIQLRLNSIRRLSTIARALGEERTRNELIPFLSENNDDDDEVLLAMTEELGVFIPYVGGLEHACVLLPPLETLCTVEETRVRDKAVESLCRIGSQMKENDLINWFIPLVKRLASGEWFTARVSACGLFHIAYPSAPEMLKMELRAIYSQLCQDDMPMVRRSAASSLWKFSATVEPVHLKNDIMTIFENLTQDDQDSVRLLVVEGCATLGKLLEPQECIARILPVIISFSQDRSWRVRYMVADQLYELCHAVGPEATRTDLVPAYMRLLRDNEAEVRIAAAGKVTKFCQILNPELAIHHILPCVKELSLDSSQHVRSALASVLMGMAPVLGKDATIDQLLPIFLSLLKDDFPDVRLNIISKLDQINQVIGTDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGIKFFDDELGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPDWAMQHLIPQVLEMINNSHYLYRMTVLRAISLLAPAMGAEITYSKLLPVVISASNDRVPNVKFNVAKVLQSLIPIVDHSVVEKTIRPCLVELSEDPDVDVRFSANQAIHVIDHVMMSS* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2967646 2980178 - Vvi1g284 Vvi1g284 769484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g284 636 Gene3D - 51 631 IPR011989 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 213 251 IPR021133 -
Vvi1g284 636 Pfam HEAT repeats 410 510 - -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 330 368 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 486 524 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 369 407 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 603 636 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 564 602 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 136 173 IPR021133 -
Vvi1g284 636 SUPERFAMILY ARM repeat 57 628 IPR016024 -
Vvi1g284 636 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 50 636 - -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 291 329 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 59 97 IPR021133 -
Vvi1g284 636 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 50 636 - -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 252 290 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 525 563 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 408 446 IPR021133 -
Vvi1g284 636 ProSiteProfiles HEAT repeat profile. 447 485 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g284 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A - vvi:100244069 1152.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g284 Vvi17g338 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g284 . . . . . Bpe10g00941 Bma14g01701 Bma15g00083 . Cmo18g01047 . Cma18g01033 . Car18g00957 Sed06g1871 Cpe09g00286 . Bhi07g01346 Tan04g0883 Cmetu10g0865 . Hepe01g1208 . . Cla05g02316 Cam05g2488 Cec05g2512 Cco05g2554 Clacu05g2483 Cmu05g2346 Cre05g2462 . . . . Lsi04g00273 Csa05g02596 . Cme10g00276 Blo06g01049 Blo11g00833 Bda07g01529 . Bpe11g01692 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46