Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g286 ATGAGGTCCAAATTGATCCCACTCTTTACGCATATTTTTTTGGGTTCATGTTCTTTAAGTGTTCTATTTCAATTTATACAGAAAGTTGAGGTGATTGTGAAGGTGATGGAGACACCAAGGCTGGTACTGAAGTTCGTATGGATGGAGAAGAACATTGGGAGTAAGCCATGGATATCTCAGAAGAAGATGATTATTCTTCTCAATGAGGCTACTGATATCATCAATTTGTGGCAGCAGAGTGGTGGCAATCAATCTTAG 258 39.15 MRSKLIPLFTHIFLGSCSLSVLFQFIQKVEVIVKVMETPRLVLKFVWMEKNIGSKPWISQKKMIILLNEATDIINLWQQSGGNQS* 86
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3007048 3007411 + Vvi1g286 Vvi1g286 769486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g286 85 PANTHER 30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC 20 53 IPR006924 GO:0003735|GO:0005840|GO:0006412
Vvi1g286 85 PANTHER 30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC 54 83 IPR006924 GO:0003735|GO:0005840|GO:0006412
Vvi1g286 85 Gene3D - 47 85 IPR038447 -
Vvi1g286 85 PANTHER 30S RIBOSOMAL PROTEIN 3, CHLOROPLAST, PUTATIVE-RELATED 20 53 - -
Vvi1g286 85 PANTHER 30S RIBOSOMAL PROTEIN 3, CHLOROPLAST, PUTATIVE-RELATED 54 83 - -
Vvi1g286 85 Pfam Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) 49 79 IPR006924 GO:0003735|GO:0005840|GO:0006412
Vvi1g286 85 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g286 K19032 PSRP3; 30S ribosomal protein 3 - qsu:112016578 90.8929
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .