Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g291 ATGGAAGAAGGTGAGATTGTCGAAGAAGAGGGGTTTGGGGCTGGTGGTGATGCAATTGAGAAGAGGAAATCTGATTCTGATGTTGAGTCTGGCGAGATTAAAGCACTGGAAGTTCGTGATGTATCTGATGTTCAAAATCTGGATGGTCATATGGCAAATGGTGATCAACAAGAATTTTGCGCAATGGCTAATAGTAGAGGGAAAGTTGCTAGAAATTTGAATACATTGCAAGAGTATAGGAGTGATGATGATTTGGTGACTGATTCAGATTTAGTAAATGAGACAGGCAAATCAGACTATGAAGCTAAAATTGGTAATAAGATCCATGGTGAGGATGGTTTGTCAAGGCATCCAAGTGCCAAGCATTACGAAGAATTGTTTTCGATTGGTAGTCCAGATGGTGATATGAATAGGGATGCTCGCCATGAATCTCATCGGAAGAACAATTCGGGATGTGAATCTCCTGTAAAAGGATATGGCAAGACAGAGAGTTATTATGAGGTTGATAAAAGTGAATTACAAAACCAGAGAAAATCATTGTCATCTGAAAGTGCAGGGGACAAATACAAAAAGTTGGCACACTCACCAACTCATGATCGATATCGAGATAAGGTCCATATGAGGGGCAGATCAAGGTCACATGATCATGCTAGGGAGCGGTCTCGTTCCCAAAGCATTTTGCAAGATGTGGCCCTATCTAAAGCAACCCACCATCAAGAATGGAATGCCTCAAGTTATGCTGGTAACAGAAGGACTGACAATGATACAGATGAAGAAATGGCTCTAAGAAGAAGGGATTATCGACATCCTAGCCGAGATTTGGTGAGGGATGAGGAAAGAGAGCGTAGTAGTAGTCATAGCAGACAAACTCAGAGAGGGGACAAACATCAAAGTCGGGAGACATGGGACATGGCTAAGGCAGGAAGGGAGATGGACTGGGAAAGGCAAAGGGAGAGAGAGCAAGACAGAAGTAGGGAGAGGGAGAGGGAGAGGAACCGGGAAAGGGATAGAAAAAGGGAGAAGGAACGGGATAGGAGCATGGACAGGGAGATGGATAGGAATAGGAAAAGGGAGAAGGATAGGGGCACAGACAGGGAGATGGACAGGGGTAGGAAACAGGAGAGAGAAAGAGATAGGAGCTGGGACAGGGACAGGGCAAGGGAGAGAGATAGAAATAGAAATAGGGACATAGATTGGGAGAACGACAGGGATAGGGCCAGGGACAGGAAATCAGAGAGGGGGAGTGGAAGGGACAGAAGTAGGGATAAAGTTAGGGATTCCGAGAGTGATAGAGTTAGCAGGCACCATAAATACGAAACTCTTAATGATGGTTATGGAAATCGAGATAGGTATGGTGATTCCTGGTATCTAAGACATGATGAGACAGAACATCAGAGGCATAGAACAAGGAAGAATGATGAAGAAAAAGGTCTCAGTTCTAAGAATGATTCGCTTGAAGGGAATGGTGACAAACTGAATAGAGATGAAGATGAGCATGAAGACTACCAGGAAAGGGTTACATTGCAACTAGCAGAAAAGGAAGAGGAAGAGTTTAACCGAATTAAGGAGGAGAGTAGAAGGCGAAGACAAGCCATCCTAGAAAAATATAAAAGTCAACACTCACAGCAACAACTTGCATCTCATACAGAGGATACAGGGAAAGATAAGGAATCTGTGGAGCAGCCCAGTGAGACAATAGTTGCTGAAACTATGGTCCCAGAGGTTCCCGATGGGAAGAATGATGGTACAGATACCTATGATGCTGATCCATCATTTTCTGTGGGGAAGTCACCTCCACAAAATGGACTTTCTGCCTCTGAGAGGACATCTGGTGCCGGGGGTCTGGGTGAGGGCACTCCAAAGAGTGAAAGACCAGATGATATGTTCTGTGATGATATTTTTGGAGAGTCACCAGCAGGAGTTCGTAAATCGGGAAGAGGAGATGGCTTACTAATTGAAAGGAGTGGTCTTCATGACAATTGGGATGATGCAGAGGGATACTATAGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGCTGGGAATGGTGAGCCAGAAGAAGTGGCTATAAAAATCATACGAAATAATGACACAATGTATAAAGCTGGTCTGGAAGAGTTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGACAAGCGTCATTGTGTTCGTTTTCTCTCTAGTTTCAAATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTTCTAAAGAAGTTCGGTCGTAATATTGGCCTTAAATTAACTGCTGTAAGGGCATATGCTAAACAGCTTTTCATTGCTCTCAAGCATCTTAGGAACTGTGGCGTTCTGCATTGTGATATAAAGCCAGATAATATGCTGGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAATTCTAGGCTTGCCTTATGACCATCCCATGGATATTTGGTCTGTTGGTTGTTGTTTGTATGAGCTTTATACGGGAAAAGTTCTTTTTCCGGGTCCTTCAAACAATGACATGCTTCGGCTTCACATGGAGTTGAAGGGTCCTTTTCCAAAAAAGATGCTTCGAAAGGGAGCATTTACTGATCAGCACTTTGATCAGGACCTTAATTTCCATGCCACTGAGGAGGATCCTGTCACAAAGAAGACAATAAAAAGGCTGATTATGAACATAAGGCCAAAAGATATTGGTACAATAATTTCAAGCTCTCCTGGTGAGGACCCAAAGATGGCAGTGAATTTCAAAGATCTTTTAGAAAAAATATTTGTGTTGGATCCGGAGAAGAGGATGACAGTCTCACAAGCATTGTGTCATCCATTCATCACGGGCAAGTGA 2997 42.88 MEEGEIVEEEGFGAGGDAIEKRKSDSDVESGEIKALEVRDVSDVQNLDGHMANGDQQEFCAMANSRGKVARNLNTLQEYRSDDDLVTDSDLVNETGKSDYEAKIGNKIHGEDGLSRHPSAKHYEELFSIGSPDGDMNRDARHESHRKNNSGCESPVKGYGKTESYYEVDKSELQNQRKSLSSESAGDKYKKLAHSPTHDRYRDKVHMRGRSRSHDHARERSRSQSILQDVALSKATHHQEWNASSYAGNRRTDNDTDEEMALRRRDYRHPSRDLVRDEERERSSSHSRQTQRGDKHQSRETWDMAKAGREMDWERQREREQDRSRERERERNRERDRKREKERDRSMDREMDRNRKREKDRGTDREMDRGRKQERERDRSWDRDRARERDRNRNRDIDWENDRDRARDRKSERGSGRDRSRDKVRDSESDRVSRHHKYETLNDGYGNRDRYGDSWYLRHDETEHQRHRTRKNDEEKGLSSKNDSLEGNGDKLNRDEDEHEDYQERVTLQLAEKEEEEFNRIKEESRRRRQAILEKYKSQHSQQQLASHTEDTGKDKESVEQPSETIVAETMVPEVPDGKNDGTDTYDADPSFSVGKSPPQNGLSASERTSGAGGLGEGTPKSERPDDMFCDDIFGESPAGVRKSGRGDGLLIERSGLHDNWDDAEGYYSHRFGEILDGRYEITAAHGKGVFSTVVRAKDLKAGNGEPEEVAIKIIRNNDTMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFSGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELYTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHATEEDPVTKKTIKRLIMNIRPKDIGTIISSSPGEDPKMAVNFKDLLEKIFVLDPEKRMTVSQALCHPFITGK* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3030504 3040686 - Vvi1g291 Vvi1g291 769491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g291 998 MobiDBLite consensus disorder prediction 108 123 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 251 535 - -
Vvi1g291 998 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 355 998 - -
Vvi1g291 998 PANTHER DUAL SPECIFICITY PROTEIN KINASE 355 998 - -
Vvi1g291 998 CDD STKc_PRP4 679 995 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vvi1g291 998 SMART serkin_6 680 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g291 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Vvi1g291 998 Pfam Protein kinase domain 684 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g291 998 Coils Coil 508 531 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 14 31 - -
Vvi1g291 998 ProSiteProfiles Protein kinase domain profile. 680 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g291 998 MobiDBLite consensus disorder prediction 1 31 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 183 223 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 135 150 - -
Vvi1g291 998 Coils Coil 324 344 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 108 644 - -
Vvi1g291 998 Gene3D Transferase(Phosphotransferase) domain 1 740 996 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 594 608 - -
Vvi1g291 998 MobiDBLite consensus disorder prediction 224 250 - -
Vvi1g291 998 SUPERFAMILY Protein kinase-like (PK-like) 667 997 IPR011009 -
Vvi1g291 998 Gene3D Phosphorylase Kinase; domain 1 650 739 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g291 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - vvi:100247382 1815.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76499 PF00069 Pkinase 5.60E-47 CL0016 Vvi PK