Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g298 ATGAAGATTTTCGTCAAGACTTTGAAAGGAACTCACTTCGAAATCCAAGTGAAACCTGAAGATACAGTTGCTGATGTGAAGGCAAATATAGAGGCAGTTCAAGGATCAGATGTTTATCCTGCTTCACAACAGATGCTTATCCATCAAGGAAAGGTTCTTAAGGATGGCACAACATTGGATGAAAACAAAGTTGCTGAAAATAGTTTTGTAGTTGTCATGTTATCAAAGAATAAGAACTCATCTGAAGGTTCAACCGCATCAACTGCACCTGCACCTGCACCTGCACCTGCACCTACACCTATAGTTAAGGCTCCATCTGCAAGTGCCCCTCCTCCAACTACAACTTCAACATTAACAGCACCTCAAGCTCCTGTAGTAGCCTTGCCACCGCCTGCAACCGTACCTGCCCCTGCTCCAGCTGCAACTCCAGCATCTACAGTCACTGTTGTATCTGAGACTGATGCCTATGGCCAAGCAGCTTCAAATCTAGTTGCAGGAAACAATTTTGAGGAAGCTATCCAACAAATTCTTGATATGGGGGGAGGGACTTGGGACAGGGACACTGTTGTCCGTGCTCTTCGTGCTGCATATAATAACCCAGAGCGTGCAGTTGAATATCTATATTCTGGTATCCCTGAGCAAGCTGAAGTTCCACCTGTGGCTCGTGCCCCTGCCAGTGGGCAAGCTGCAAATCCTCCAGCCCAATCTCAGCAACCAGTACCTGCTCCTTCAAGTGGGCCCAATGCAAATCCATTAGATCTTTTCCCCCAGGGCATTCCCAATGTGGGTTCAAATCCTGCTGGTGCAGGGACCTTGGATTTTCTTCGCAACAGCCAACAATTCCAAGCTTTGCGAGCTATGGTGCAAGCTAATCCACAAATCTTGCAGCCTATGCTTCAAGAGCTTGGAAAACAAAATCCTCAGCTAATGAGGCTTATTCAAGAACATCAGGCTGATTTCCTTCGCCTTATCAATGAACCTGTAGAAGGGGGAGAGGGGAACATACTAGGGCAGCTTGCTGCAGCAATGCCACAGGCAGTGACAGTGACGCCGGAGGAACGGGAAGCCATAGCTCGTCTTGAAGCAATGGGTTTTGACCGTGCCCTGGTGTTGGAGGTGTTCTTTGCCTGCAACAAGAATGAGGAGCTGGCTGCCAACTATCTTTTAGACCACATGCATGAGTTCGAGGATTGA 1194 47.74 MKIFVKTLKGTHFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLDENKVAENSFVVVMLSKNKNSSEGSTASTAPAPAPAPAPTPIVKAPSASAPPPTTTSTLTAPQAPVVALPPPATVPAPAPAATPASTVTVVSETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARAPASGQAANPPAQSQQPVPAPSSGPNANPLDLFPQGIPNVGSNPAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIARLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3084063 3093046 - Vvi1g298 Vvi1g298 769498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g298 397 MobiDBLite consensus disorder prediction 79 119 - -
Vvi1g298 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 350 391 IPR015940 -
Vvi1g298 397 CDD UBA1_Rad23_plant 163 212 - -
Vvi1g298 397 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 167 210 IPR015940 -
Vvi1g298 397 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vvi1g298 397 SUPERFAMILY UBA-like 166 222 IPR009060 GO:0005515
Vvi1g298 397 Pfam UBA/TS-N domain 353 388 IPR015940 -
Vvi1g298 397 Pfam UBA/TS-N domain 170 207 IPR015940 -
Vvi1g298 397 Gene3D - 263 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vvi1g298 397 SMART uba_6 353 390 IPR015940 -
Vvi1g298 397 SMART uba_6 169 209 IPR015940 -
Vvi1g298 397 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vvi1g298 397 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 1 396 - -
Vvi1g298 397 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Vvi1g298 397 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 396 - -
Vvi1g298 397 SMART ubq_7 1 75 IPR000626 GO:0005515
Vvi1g298 397 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Vvi1g298 397 PRINTS DNA repair protein Rad23 signature 347 363 IPR004806 GO:0006289
Vvi1g298 397 PRINTS DNA repair protein Rad23 signature 364 378 IPR004806 GO:0006289
Vvi1g298 397 PRINTS DNA repair protein Rad23 signature 379 394 IPR004806 GO:0006289
Vvi1g298 397 SMART CBM 270 313 IPR006636 -
Vvi1g298 397 Gene3D - 345 392 - -
Vvi1g298 397 Coils Coil 299 319 - -
Vvi1g298 397 SUPERFAMILY UBA-like 334 395 IPR009060 GO:0005515
Vvi1g298 397 Gene3D - 162 212 - -
Vvi1g298 397 MobiDBLite consensus disorder prediction 91 107 - -
Vvi1g298 397 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vvi1g298 397 Gene3D - 1 80 - -
Vvi1g298 397 TIGRFAM rad23: UV excision repair protein Rad23 1 396 IPR004806 GO:0006289
Vvi1g298 397 MobiDBLite consensus disorder prediction 220 263 - -
Vvi1g298 397 CDD Ubl_Rad23 1 74 - -
Vvi1g298 397 SUPERFAMILY XPC-binding domain 268 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g298 K10839 RAD23, HR23; UV excision repair protein RAD23 - vvi:100245820 651.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g298 Vvi14g890 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41