Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g309 ATGAGAACAAGCTGCAATGGGTGTAGGGTTCTTCGCAAGGCATGCAGCCAAGACTGCATCATCAAACCTTGCCTTGAGTGGATCAAAAATCCTGATTTCCAAGCCAATGCTACTCTCTTCCTTGCCAAATTCTATGGCCGTGCAGGTCTCATAAACCTCATCAATGCCGGACCCCAACAACTTCGCCCCGCCATATTCAGATCGCTGCTTTGGGAAGCTTGTGGACGGGTAGTGAATCCAATATATGGGTCCGTCGGATTGCTCTGGTCCGGTGACTGGAACCGCTGCCTCGATGCCGTGGATGCAGTGCTCAGAGGTGTTCCCATCGCCAGAAAACCATCTGAAGCTACCTCAAGCAGCCCGAGCGACCATCCTGTAAAGGCCTATGACATACGTCATGTCTCTAAGGATTTCAAATTCCCTACTACTGAAAACCTCAATAGAGTCACAGCCCCAGCCCCAAAACCATTCAAGCGTTCTTCTAAGTCCAAGCCAAAACCTCAAGCCAGCTTGGTTTTCGACTTTGCAACCAAACCAGCCGCAGATCAGTCTGATAAGTTTTGTGACGTTAGATTGCCGTGGCCTAGCTCACACGAGTTCAATCAAACGCCGAGTCACGAACCGTCGTTAGGTTATCACTTAGAATGGCTTACAAAATTAGATACGGAAAGTGATAAGAGCAAAGTAAAGTTGGAACTGACTCTTGGTTCTGGGACCAACTTTTAG 726 48.48 MRTSCNGCRVLRKACSQDCIIKPCLEWIKNPDFQANATLFLAKFYGRAGLINLINAGPQQLRPAIFRSLLWEACGRVVNPIYGSVGLLWSGDWNRCLDAVDAVLRGVPIARKPSEATSSSPSDHPVKAYDIRHVSKDFKFPTTENLNRVTAPAPKPFKRSSKSKPKPQASLVFDFATKPAADQSDKFCDVRLPWPSSHEFNQTPSHEPSLGYHLEWLTKLDTESDKSKVKLELTLGSGTNF* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3204589 3205665 + Vvi1g309 Vvi1g309 769509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g309 241 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi1g309 241 Pfam Lateral organ boundaries (LOB) domain 4 97 IPR004883 -
Vvi1g309 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 207 - -
Vvi1g309 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 207 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g309 Vvi14g884 ECH
Vvi1g309 Vvi17g327 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14499 PF03195 LOB 7.00E-22 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g309 - - vvi:100259299 483.796