Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g309 | ATGAGAACAAGCTGCAATGGGTGTAGGGTTCTTCGCAAGGCATGCAGCCAAGACTGCATCATCAAACCTTGCCTTGAGTGGATCAAAAATCCTGATTTCCAAGCCAATGCTACTCTCTTCCTTGCCAAATTCTATGGCCGTGCAGGTCTCATAAACCTCATCAATGCCGGACCCCAACAACTTCGCCCCGCCATATTCAGATCGCTGCTTTGGGAAGCTTGTGGACGGGTAGTGAATCCAATATATGGGTCCGTCGGATTGCTCTGGTCCGGTGACTGGAACCGCTGCCTCGATGCCGTGGATGCAGTGCTCAGAGGTGTTCCCATCGCCAGAAAACCATCTGAAGCTACCTCAAGCAGCCCGAGCGACCATCCTGTAAAGGCCTATGACATACGTCATGTCTCTAAGGATTTCAAATTCCCTACTACTGAAAACCTCAATAGAGTCACAGCCCCAGCCCCAAAACCATTCAAGCGTTCTTCTAAGTCCAAGCCAAAACCTCAAGCCAGCTTGGTTTTCGACTTTGCAACCAAACCAGCCGCAGATCAGTCTGATAAGTTTTGTGACGTTAGATTGCCGTGGCCTAGCTCACACGAGTTCAATCAAACGCCGAGTCACGAACCGTCGTTAGGTTATCACTTAGAATGGCTTACAAAATTAGATACGGAAAGTGATAAGAGCAAAGTAAAGTTGGAACTGACTCTTGGTTCTGGGACCAACTTTTAG | 726 | 48.48 | MRTSCNGCRVLRKACSQDCIIKPCLEWIKNPDFQANATLFLAKFYGRAGLINLINAGPQQLRPAIFRSLLWEACGRVVNPIYGSVGLLWSGDWNRCLDAVDAVLRGVPIARKPSEATSSSPSDHPVKAYDIRHVSKDFKFPTTENLNRVTAPAPKPFKRSSKSKPKPQASLVFDFATKPAADQSDKFCDVRLPWPSSHEFNQTPSHEPSLGYHLEWLTKLDTESDKSKVKLELTLGSGTNF* | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3204589 | 3205665 | + | Vvi1g309 | Vvi1g309 | 769509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g309 | 241 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Vvi1g309 | 241 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 97 | IPR004883 | - | |
Vvi1g309 | 241 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 207 | - | - | |
Vvi1g309 | 241 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 207 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14499 | PF03195 | LOB | 7.00E-22 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g309 | - | - | vvi:100259299 | 483.796 |