Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g31 ATGGCAATGCAAACAGAAGATTCTTCCCCTGGCCCCAGTGCTGAAGTGGTCGGGAATGTGTTTGTGGAACAGTATTACCTCGTTCTTTATCAATCCCCAGAACTGGTTTACAGATTTTATCATGATTCTAGTGTGCTAAGCCGACCTGGGCCTGATGGTGTAATGACAACAGTGACAACCTCAGAAGGAATTAATGACATGATCCTCTCCTTTGACTACAAGGGCCATAAGGCAGAGATATTGACTGCAGATGCTCAGTTTTCCTACAAGGATGGGGTGGTTGTTTTGGTAACCGGTTGTTTGACTGGGAAGGACAATGTGAGAAGGAAATTCACTCAGTCATTCTTTCTAGCTCCACAAGATAATGGCTACTTTGTCTTAAATGATGTTTTTAGATACATGGATGAAAGAGAATCGCTCATGGTTGAAACCATTGCAGTTAATGATGTAAATGAAAATTCTCCAGTAGCGCCTTTGACTCCAGAGCCAGAAAGCACTCATGTTCTTGATCACCCTAAGTCGAATAACACTAGTCCCGTGGAAGAAGATGCTGCCGATGATGAAGAAGTATGTGATCTAACAGAAAATGAAGGGGTACCAGTTTCTGAAGAAAAGGTTGTTTGTGAAATCCCAGTTGATCCAAGTAAAGATGTTCACCCAGTCTCTGAGACAGTTTCTGCTGTCATTAATGAGGATGCACCAAAGAAGTCTTATGCTTCCATAGTGAAGGTGATGAAGGGGGAGATGGCTACAAGTTCAGTTCATGTACCTCCTGGTGCTGTAAGAGCTGCTAAAAGTAATGCAAAGGTTTCACCTGCAAACATTGAGCGACATGTAAGCACATCTGCAGCACCCCGAGCACAAGTTCATAGTAGCAACAGTGCCCCCAGTGGCAACAGTGCCCCCAGTGGTAACAATGCTCCCAGTAGCAACAGTACCCCCACTAATAATGGTGCCCCTAGAAGCAACATTTCTCCAGAAAGTGGCCAGGATCATCCTGAAGTTGGTGGCCATTCCATATACATCGGGAATCTGCCTTTGAATGCGACTGTTCAACAAGTTGAAGGGGTGTTTAAGAAATTTGGGCCCATCATAAGTGGTGGTATCCAAATTAGAAGTTACAAAGGCTATGGTTTTGGTTTTGTTGAGTTTGAATCCTTGGATTCCATGCATAGTGCAATAAAGGCTTCTCCTATTACAATTGGCGGTCACCAGGCTACTATTGAGCAGAAGAAGACTACCCTTCGAGTTGGCAATGACAGGGGGAGGCCCTCATCAGGAAGAGGTGGATACCGAAACGATAACTTCAGGGGCCGTGGGAACTTTGGTGGACGCGGCTATGGCAGGAACGAGTTTGGCTACCGGGGCGAGTTCTATGGACGAGGTCGGGCCCCTAATGGACGCAATAGCGACCCCTACCAGAGGGATTATCAGAACAGGGGTGGAAGAGTTTAA 1455 45.77 MAMQTEDSSPGPSAEVVGNVFVEQYYLVLYQSPELVYRFYHDSSVLSRPGPDGVMTTVTTSEGINDMILSFDYKGHKAEILTADAQFSYKDGVVVLVTGCLTGKDNVRRKFTQSFFLAPQDNGYFVLNDVFRYMDERESLMVETIAVNDVNENSPVAPLTPEPESTHVLDHPKSNNTSPVEEDAADDEEVCDLTENEGVPVSEEKVVCEIPVDPSKDVHPVSETVSAVINEDAPKKSYASIVKVMKGEMATSSVHVPPGAVRAAKSNAKVSPANIERHVSTSAAPRAQVHSSNSAPSGNSAPSGNNAPSSNSTPTNNGAPRSNISPESGQDHPEVGGHSIYIGNLPLNATVQQVEGVFKKFGPIISGGIQIRSYKGYGFGFVEFESLDSMHSAIKASPITIGGHQATIEQKKTTLRVGNDRGRPSSGRGGYRNDNFRGRGNFGGRGYGRNEFGYRGEFYGRGRAPNGRNSDPYQRDYQNRGGRV* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 419905 428372 + Vvi1g31 Vvi1g31 769231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g31 484 MobiDBLite consensus disorder prediction 263 337 - -
Vvi1g31 484 Gene3D - 326 450 IPR012677 -
Vvi1g31 484 SUPERFAMILY RNA-binding domain, RBD 328 442 IPR035979 GO:0003676
Vvi1g31 484 Gene3D - 7 137 - -
Vvi1g31 484 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Vvi1g31 484 MobiDBLite consensus disorder prediction 284 329 - -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 302 - -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 307 476 - -
Vvi1g31 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 404 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 153 185 - -
Vvi1g31 484 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Vvi1g31 484 SMART rrm1_1 339 409 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 413 442 - -
Vvi1g31 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 422 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 459 484 - -
Vvi1g31 484 SUPERFAMILY NTF2-like 13 133 IPR032710 -
Vvi1g31 484 CDD RRM_SF 340 409 - -
Vvi1g31 484 CDD NTF2 13 135 IPR018222 -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 307 476 IPR039539 -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 302 IPR039539 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g31 Vvi17g461 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g31 K24983 - vvi:100250757 852.818