Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g31 ATGGCAATGCAAACAGAAGATTCTTCCCCTGGCCCCAGTGCTGAAGTGGTCGGGAATGTGTTTGTGGAACAGTATTACCTCGTTCTTTATCAATCCCCAGAACTGGTTTACAGATTTTATCATGATTCTAGTGTGCTAAGCCGACCTGGGCCTGATGGTGTAATGACAACAGTGACAACCTCAGAAGGAATTAATGACATGATCCTCTCCTTTGACTACAAGGGCCATAAGGCAGAGATATTGACTGCAGATGCTCAGTTTTCCTACAAGGATGGGGTGGTTGTTTTGGTAACCGGTTGTTTGACTGGGAAGGACAATGTGAGAAGGAAATTCACTCAGTCATTCTTTCTAGCTCCACAAGATAATGGCTACTTTGTCTTAAATGATGTTTTTAGATACATGGATGAAAGAGAATCGCTCATGGTTGAAACCATTGCAGTTAATGATGTAAATGAAAATTCTCCAGTAGCGCCTTTGACTCCAGAGCCAGAAAGCACTCATGTTCTTGATCACCCTAAGTCGAATAACACTAGTCCCGTGGAAGAAGATGCTGCCGATGATGAAGAAGTATGTGATCTAACAGAAAATGAAGGGGTACCAGTTTCTGAAGAAAAGGTTGTTTGTGAAATCCCAGTTGATCCAAGTAAAGATGTTCACCCAGTCTCTGAGACAGTTTCTGCTGTCATTAATGAGGATGCACCAAAGAAGTCTTATGCTTCCATAGTGAAGGTGATGAAGGGGGAGATGGCTACAAGTTCAGTTCATGTACCTCCTGGTGCTGTAAGAGCTGCTAAAAGTAATGCAAAGGTTTCACCTGCAAACATTGAGCGACATGTAAGCACATCTGCAGCACCCCGAGCACAAGTTCATAGTAGCAACAGTGCCCCCAGTGGCAACAGTGCCCCCAGTGGTAACAATGCTCCCAGTAGCAACAGTACCCCCACTAATAATGGTGCCCCTAGAAGCAACATTTCTCCAGAAAGTGGCCAGGATCATCCTGAAGTTGGTGGCCATTCCATATACATCGGGAATCTGCCTTTGAATGCGACTGTTCAACAAGTTGAAGGGGTGTTTAAGAAATTTGGGCCCATCATAAGTGGTGGTATCCAAATTAGAAGTTACAAAGGCTATGGTTTTGGTTTTGTTGAGTTTGAATCCTTGGATTCCATGCATAGTGCAATAAAGGCTTCTCCTATTACAATTGGCGGTCACCAGGCTACTATTGAGCAGAAGAAGACTACCCTTCGAGTTGGCAATGACAGGGGGAGGCCCTCATCAGGAAGAGGTGGATACCGAAACGATAACTTCAGGGGCCGTGGGAACTTTGGTGGACGCGGCTATGGCAGGAACGAGTTTGGCTACCGGGGCGAGTTCTATGGACGAGGTCGGGCCCCTAATGGACGCAATAGCGACCCCTACCAGAGGGATTATCAGAACAGGGGTGGAAGAGTTTAA 1455 45.77 MAMQTEDSSPGPSAEVVGNVFVEQYYLVLYQSPELVYRFYHDSSVLSRPGPDGVMTTVTTSEGINDMILSFDYKGHKAEILTADAQFSYKDGVVVLVTGCLTGKDNVRRKFTQSFFLAPQDNGYFVLNDVFRYMDERESLMVETIAVNDVNENSPVAPLTPEPESTHVLDHPKSNNTSPVEEDAADDEEVCDLTENEGVPVSEEKVVCEIPVDPSKDVHPVSETVSAVINEDAPKKSYASIVKVMKGEMATSSVHVPPGAVRAAKSNAKVSPANIERHVSTSAAPRAQVHSSNSAPSGNSAPSGNNAPSSNSTPTNNGAPRSNISPESGQDHPEVGGHSIYIGNLPLNATVQQVEGVFKKFGPIISGGIQIRSYKGYGFGFVEFESLDSMHSAIKASPITIGGHQATIEQKKTTLRVGNDRGRPSSGRGGYRNDNFRGRGNFGGRGYGRNEFGYRGEFYGRGRAPNGRNSDPYQRDYQNRGGRV* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 419905 428372 + Vvi1g31 Vvi1g31 769231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g31 484 MobiDBLite consensus disorder prediction 263 337 - -
Vvi1g31 484 Gene3D - 326 450 IPR012677 -
Vvi1g31 484 SUPERFAMILY RNA-binding domain, RBD 328 442 IPR035979 GO:0003676
Vvi1g31 484 Gene3D - 7 137 - -
Vvi1g31 484 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Vvi1g31 484 MobiDBLite consensus disorder prediction 284 329 - -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 302 - -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 307 476 - -
Vvi1g31 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 404 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 153 185 - -
Vvi1g31 484 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Vvi1g31 484 SMART rrm1_1 339 409 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 413 442 - -
Vvi1g31 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 422 IPR000504 GO:0003723
Vvi1g31 484 MobiDBLite consensus disorder prediction 459 484 - -
Vvi1g31 484 SUPERFAMILY NTF2-like 13 133 IPR032710 -
Vvi1g31 484 CDD RRM_SF 340 409 - -
Vvi1g31 484 CDD NTF2 13 135 IPR018222 -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 307 476 IPR039539 -
Vvi1g31 484 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 302 IPR039539 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g31 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - vvi:100250757 852.818
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g31 Vvi17g461 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003246 4 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 2 50