Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g310 ATGAGGATGAGCTGCAATGGCTGTAGGGTTCTTCGCAAAGGTTGTAGTGATGACTGCAGTCTCAGACCCTGTCTTGAATGGATCAAAACTCCTGAATCCCAAGCCAATGCCACCGTCTTCCTAGCCAAGTTCTATGGCCGTGCCGGTCTCATGAACCTCCTCAATGCGGGGCCTGAGCACCTCCGTCCCGCCATATTCAGATCACTGCTTTACGAGGCCTGTGGACGAATCGTCAATCCTATATATGGATCGGTGGGGTTGCTATGGTCCGGGAACTGGAACCACTGCCAAAACGCGGTTGATGCAGTGCTTGGAGGATCGCAGATCATGGAAGTCCCTTGCGATACCGCTGCGATCCGCCCTATCCTTCCGCTCAAGGCGTATGACATACGCCACCTATCCAAGGACGCAAACTCTCCTCATGACCTTCACAAGGCTAAAACTCGAAGCCGGTTCAAGCGGTGTGGTGCTCGATCCAAACCCCATTTGGATTCGGCTGAGTTTTGTAACCCTGGATGGAACCAGTTTTCCCCGGTCGACTACAACCGAACGCCCAGTCACGACTCCTCTCTGATTCAGCAGGAGACTGACAGCATGTTCTCTGTGGAAACCGTGGAGGCTTCGCTGGCGACTCCCCCAAAACCAAACCAACTTCTGAAATCCGATGGCCAAACCGATAAAACCGAGGCTGGGTTGGAACTCACTCTTGGCTTCTATCCAATCTCACGCCCCCACGCATCTTTTAGTTCCTGCTGTTTTAGTTTCATCCTTTCACATTTTCTTTTTCTTTCTCCTTCTTTTAAAAGTTCTATATCTCTGGTGTTTGGGTGCATAATCGAAACAGAAAAGATGGATACACAGAAATATATACACATGTTATCAAAATCATTTGAATCTCAATCTATGACCATCACCAAATCTGGAAATTCCATATACAAGAAATATAAACATGTTGTCCAAAGCATTTCAATTTTCAATCTCAGACCATCGCCAAAATTGGCATTCCATCAGTTACTCTCTCGTGATGTGCTGCTGCAAACGAATTGGATAAGTACAGCAGCATTGAACCAGTCTGTCTTGATGGGAGATATGAACGAAGCACTGTTGCATTCAAAAATGTGGTTTGTCATCAAGTATGCTTTTTTGCTGGCGTGGTAA 1158 47.15 MRMSCNGCRVLRKGCSDDCSLRPCLEWIKTPESQANATVFLAKFYGRAGLMNLLNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWNHCQNAVDAVLGGSQIMEVPCDTAAIRPILPLKAYDIRHLSKDANSPHDLHKAKTRSRFKRCGARSKPHLDSAEFCNPGWNQFSPVDYNRTPSHDSSLIQQETDSMFSVETVEASLATPPKPNQLLKSDGQTDKTEAGLELTLGFYPISRPHASFSSCCFSFILSHFLFLSPSFKSSISLVFGCIIETEKMDTQKYIHMLSKSFESQSMTITKSGNSIYKKYKHVVQSISIFNLRPSPKLAFHQLLSRDVLLQTNWISTAALNQSVLMGDMNEALLHSKMWFVIKYAFLLAW* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3209999 3211373 - Vvi1g310 Vvi1g310 769510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g310 385 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 245 - -
Vvi1g310 385 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vvi1g310 385 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Vvi1g310 385 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 245 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14500 PF03195 LOB 1.40E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g310 - - vvi:100254184 516.538