Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g318 ATGACTTACGCTCGCCAGTTGTTCGATCAAATTCCCGACCCCAATATTGCACTATGGAACTCGATGTTTCGTGGGTATGCCCAGAGCGAGTCGTACAGAGAAATTTTCTGTGAAATGTTTGAGAGGAATGTAGTTGCATGGACTTCGATGATTAATGGGTATATTTTGTCTGCTGATCTGGTTTCCGCACGTCGCCTTTTTGACTTGGCGCCAGAGCGTGATGTTGTGCTGTGGAACATTATGGTTTCAGGGTACATTGAAGGTGGGGACATGGTTGAGGCGCGCAAGCTCTTCCATGAGATGCCAAATCGAGATGTGATGTTTTGGAACACTGTATTGAAGGGTTATGCTACCAATGGGAATGTTGAAGCTCTTGAGGGGCTGTTTGAAGAGATGCCGGAGAGAAACATTTTTTCTTGGAACGCATTGATTGGAGGGTATGCTCATAATGGCCTTTTCTTTGAAGTTTTAGGTTCCTTTAAAAGGATGTTGAGTGAGTCTGATGTGCCTCCTAATGATGCCACTCTTGTGACAGTGTTGTCTGCTTGTGCAAGATTAGGAGCTCTTGATTTGGGCAAGTGGGTACATGTATATGCAGAGAGTAGTGGGTTGAAGGGCAATGTTTATGTTGGGAATGCTTTGATGGATATGTATGCAAAATGTGGGATCATAGAAAATGCAATTTCAGTGTTCCGGGGCATGGACACAAAAGATTTGATCTCCTGGAACACCTTAATTGGAGGCTTAGCGATGCATAGCCGTGGGGCTGATGCCTTAAATTTGTTTTTTCAGATGAAGAATGCTGGACAAAAGCCAGATGGTATCACCTTCATAGGCATCTTGTGTGCTTGTACGCATATGGGTCTAGTTGAAGATGGGTTTGCATATTTTCAATCAATGGCCGATGATTATTTAATCATGCCTCAAATTGAGCATTATGGTTGTATGGTTGATATGCTAGCACGAGCAGGTCGTTTAGAACAGGCTATGGCTTTTGTCAGGAAGATGCCTGTGGAAGCTGATGGTGTCATATGGGCTGGTTTACTTGGGGCCTGTAGGATTTACAAGAATGTTGAGTTGGCCGAACTGGCTCTTCAACGGCTGATTGAACTCGAACCAAAAAACCCTGCAAATTATGTCATGTTGTCCAATATATATGGGGATGCTGGCAGATGGGAAGATGTGGCCCGGCTAAAAGTTGCAATGAGAGATACAGGGTTTAAAAAATTACCAGGGTGTAGTTTGATTGAGGTGAATGATGCTGTAGTTGAGTTCTATTCGTTAGATGAGCGGCATCCCCAGATAGAGGAAATATATGGAGTATTGAGGGGATTAGTGAAGGTTTTAAGATCCTTTGGGTATATAACATGCATCTTTTTGTTCATTAATCAAATATTTTATTGTTTGGATTATCATTCTTTTTCTGGTTGCATGATCTACACCTGA 1446 42.67 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYITCIFLFINQIFYCLDYHSFSGCMIYT* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3281770 3283983 + Vvi1g318 Vvi1g318 769518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g318 481 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 134 451 - -
Vvi1g318 481 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 91 133 - -
Vvi1g318 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 134 451 - -
Vvi1g318 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 91 133 - -
Vvi1g318 481 SUPERFAMILY TPR-like 356 393 IPR011990 GO:0005515
Vvi1g318 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Vvi1g318 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Vvi1g318 481 Pfam PPR repeat 312 337 IPR002885 -
Vvi1g318 481 Pfam PPR repeat 109 137 IPR002885 -
Vvi1g318 481 Pfam PPR repeat 138 166 IPR002885 -
Vvi1g318 481 Pfam PPR repeat 45 72 IPR002885 -
Vvi1g318 481 Pfam PPR repeat 76 105 IPR002885 -
Vvi1g318 481 Pfam E motif 355 417 IPR046848 -
Vvi1g318 481 Gene3D Tetratricopeptide repeat domain 90 191 IPR011990 GO:0005515
Vvi1g318 481 Gene3D Tetratricopeptide repeat domain 1 89 IPR011990 GO:0005515
Vvi1g318 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vvi1g318 481 Pfam PPR repeat family 237 284 IPR002885 -
Vvi1g318 481 Gene3D Tetratricopeptide repeat domain 212 432 IPR011990 GO:0005515
Vvi1g318 481 TIGRFAM PPR: pentatricopeptide repeat domain 138 172 IPR002885 -
Vvi1g318 481 TIGRFAM PPR: pentatricopeptide repeat domain 109 137 IPR002885 -
Vvi1g318 481 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Vvi1g318 481 TIGRFAM PPR: pentatricopeptide repeat domain 76 105 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g318 - - - vvi:100257772 853.588
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24