Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g323 ATGGCGGTTCCCGCCTCACGTGCCCACACAAGGGGCCTCCGTCTCTATCGTCCACCACTTCTTCTCCCGGCACCTCAGCCTCCTAGCAATTGTCGCTCCCCACGACTCCGATCAGTCCCCGCCGTGAGGAGCGCCAGTGGACTCGCTTTTGATTTCAAAGGCGGAAAAGGAATGAGTGGGTTCCTTGATGTTGAGCTCAAAGTCCGGGATTATGAATTGGATCAATATGGTGTTGTAAACAATGCTGTTTATGCAAGTTATTGTCAACATGGTCGGCATGAGCTTCTGGAAAAGATTGGTGTCAATGCTGATGCTGTTGCTCGCACTGGTGATGCATTAGCACTTTCAGAGCTGACACTCAAATTCCTTGCACCTCTGAGAAGTGGAGACAGGTTTGTGGTGAAGGTGAGGGTCTCTGATTCCTCAGCTGCCCGCTTATACTTTGAACACTTCATCTTCAAGCTCCCAAATGAAGAGCCCATCTTGGAAGCTAGGGCCACAGCAGTATGTCTCGACAAAAACTACCGTCCCGTTCGAATACCAACAGAGATAAGATCTAAATTGGTTCAATTCCTACGACATGAGGAATCCCATTAA 597 49.25 MAVPASRAHTRGLRLYRPPLLLPAPQPPSNCRSPRLRSVPAVRSASGLAFDFKGGKGMSGFLDVELKVRDYELDQYGVVNNAVYASYCQHGRHELLEKIGVNADAVARTGDALALSELTLKFLAPLRSGDRFVVKVRVSDSSAARLYFEHFIFKLPNEEPILEARATAVCLDKNYRPVRIPTEIRSKLVQFLRHEESH* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3341191 3354024 - Vvi1g323 Vvi1g323 769523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g323 198 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 23 198 - -
Vvi1g323 198 Pfam Thioesterase-like superfamily 71 187 - -
Vvi1g323 198 Gene3D Hotdog Thioesterase 55 192 - -
Vvi1g323 198 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 23 198 - -
Vvi1g323 198 CDD 4HBT 64 172 - -
Vvi1g323 198 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 58 194 IPR029069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g323 - - - vvi:100268132 377.481
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g323 . . . Bda11g00190 . . . . . . . . . . . Cpe09g00312 . . . . . . . . . . . . . . . . . . . . Csa05g02625 Chy10g01161 Cme10g00246 . . . Bda11g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62