Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g324 ATGGTGTGCATAGATGAAAGCGAGTACAGTCACCACGCCCTCAATTGGGCTCTTGAAAATCTTCGCGATTCCCTCTCCAACTTCCAACTCATCGTCTTCACTGTACAGTCCCTTTCTGATTTCACCTATATCCACGCTTCCACTCTGGGCGTTGCTCCACCAGATCTGATTACAGAAGTCCAGGAAAGGCAAAAGAAGGTTGCATTCGCTCTTCTGGAGCGAGCTAAGGAAATATGTGCTCAGTGTGGGATTGTTGCAGAGACAATTACAGAAGTTGGAGATCCTAAAGAGGCTATATGTAAGGCAGTAGAAAAGTTGAACATCCAGTTCCTTGTTCTAGGCAGCCATGGTCGTGGTGCTTTTGGGAGGGCTTTTCTTGGAAGTGTTAGCAATTACTGCATGCATAATGCTAAGTGCCCAGTCCTTGTTGTGCGGAAACCGGAGTGA 447 46.98 MVCIDESEYSHHALNWALENLRDSLSNFQLIVFTVQSLSDFTYIHASTLGVAPPDLITEVQERQKKVAFALLERAKEICAQCGIVAETITEVGDPKEAICKAVEKLNIQFLVLGSHGRGAFGRAFLGSVSNYCMHNAKCPVLVVRKPE* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3356427 3358218 - Vvi1g324 Vvi1g324 769524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g324 148 CDD USP_Like 1 144 - -
Vvi1g324 148 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 147 - -
Vvi1g324 148 PRINTS Universal stress protein signature 105 117 IPR006015 -
Vvi1g324 148 PRINTS Universal stress protein signature 123 145 IPR006015 -
Vvi1g324 148 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 147 - -
Vvi1g324 148 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 147 - -
Vvi1g324 148 Pfam Universal stress protein family 1 145 IPR006016 -
Vvi1g324 148 Gene3D HUPs 1 148 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g324 - - - vvi:100252432 299.286
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g324 . . . . . . . . . Cmo18g01020 . . . Car18g00933 . . . Bhi07g01308 . . . . . . Cla05g02288 Cam05g2461 Cec05g2481 Cco05g2524 Clacu05g2456 Cmu05g2317 Cre05g2435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36