Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g326 ATGAACTCAAACATGGAACTGATGAACAACCGGAGTGCACCAGAGAATTCCCACATGAATGGTCACGGATTCATGGCTTTCTCCAATGTGGGATTCTCTATACATCACCAACAAGAGTTCCCTGTGAACTTCAGGGATAATACTCAAAGCCCTGTTCATGCTGGAGGTCTAAGTGCTGTCCAAGTTCTTCAGTTCTCATCGCAGCCCGGAGATTTTGGCCAGGAAACAAAGACTGGAAAAGTGAATTTTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAACCAAGAGAAGTTATCCATGTGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTTCCAGGATGCTATAAGACTATGGGAATGGCTGTGATGTTGGATGTGATAATCAATTATGTCCAGTCACTGCAGAACCAGATTGAATTTCTCTCTATGAAGCTTTCAGCAGCAAGCACCTTCTATGACTTCAACTCATCAGAGGCAGAAGCTTTGGAAACCATGCAGGGGACAAATGCATATGAGGTACATGAGGTGGAGAGGTCGGTGAAAGAAGGGTATGGAGGGCCTTCTCATCTCCACTCAACATGGCCTTTTTGA 726 44.49 MNSNMELMNNRSAPENSHMNGHGFMAFSNVGFSIHHQQEFPVNFRDNTQSPVHAGGLSAVQVLQFSSQPGDFGQETKTGKVNFVSSPPASGSEFLGDNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIEFLSMKLSAASTFYDFNSSEAEALETMQGTNAYEVHEVERSVKEGYGGPSHLHSTWPF* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3368551 3370256 - Vvi1g326 Vvi1g326 769526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g326 241 MobiDBLite consensus disorder prediction 99 119 - -
Vvi1g326 241 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 5 229 IPR024097 GO:0006355
Vvi1g326 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 197 IPR036638 GO:0046983
Vvi1g326 241 Pfam Helix-loop-helix DNA-binding domain 133 180 IPR011598 GO:0046983
Vvi1g326 241 CDD bHLH_AtBPE_like 119 202 - -
Vvi1g326 241 SMART finulus 135 185 IPR011598 GO:0046983
Vvi1g326 241 PANTHER TRANSCRIPTION FACTOR BHLH75 5 229 - -
Vvi1g326 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 179 IPR011598 GO:0046983
Vvi1g326 241 MobiDBLite consensus disorder prediction 68 93 - -
Vvi1g326 241 Gene3D - 126 197 IPR036638 GO:0046983
Vvi1g326 241 MobiDBLite consensus disorder prediction 68 119 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g326 Vvi14g875 ECH
Vvi1g326 Vvi17g314 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14502 PF00010 HLH 3.80E-05 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g326 - - vvi:100264677 473.396