Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g328 ATGGTGGTTGAGGACGACAACTCAGAGAAGCCTCTGGACCTGTTTCTCAAGATTGGTTTAGATGAGAGGACTGCAAGGAACACCATCGCCAATAATAAGGTCACCGCAAATTTGACGGCTGTGATTCACGAGGCAGCGCTCACTAATGGATGCAATCGTACAGTTGGAAATCTTCTGTACACAGTTGCTACAAAATTTCCAGCAAATGCCCTTGTGCATCGTCCAACTCTTTTGCAATATATTGTCTCATCAAAGATTAAAACTCCAGCCCAGTTAGAAGCAGCATTTTCATTTTATTCAAGCATTGGTTCAGAGAACTTTGAGTTAAAAGAATTTGAAGAATCATGTGGTGTTGGTATCGATGTTCCTATTGAAGATATTGAACGCACCGTTAATGAGATTTTTGAGGAGAACAAGAATGTGATTTTGGGGCAACGTTACCAAACAAATGTTGGTGATTTATTTGGGCATGTTCGCAAGAGTCACCCTTGGGCTGATCCAAAGATTGTGAAGCAACTTATAGATGTGAAATTATACGGATTGCTTGGTGAGAAGACTGCAGCAGATGATGAAAAGCCTTCAAGAAAGAAGAAAGAAAAACAAGCTAAAAGCGAGTCAATTGCTGTGGATACTCATCCACCACCAACATCTGAAGAAGAGCTTAATCCATTTTTGATATTCCCCCAGCCAGAGGAGAATTTTAAGGTTCACACTGAAATATTTTTTAGTGATCGCCCGGTGTTGAGAGTTTGTAACACAAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGGCAATGTTTGTTAGCTTTGGCCTGGCAAAAGAGCGGGATGGATGCTGCTACCTGAGGTATGATGACACAAACCCTGAAGCTGAAAAGAAAGAATATATTGATCATATTGACGAAATTGTCCGGTGGATGGGTTGGGAACCTTTCAAGGTTACTTACACCAGTGATTATTTCCAAGATTTGTATGATCTAGCAGTGGAGCTAATACGAAGGAATCATGCCTATGTTGATCATCAGACTCCTGAAGAAATAAAAGAGTACAGGGAAAAGAAGATGAACAGTCCTTGGAGGGATAGACCAATTGCAGAATCGTTGGAACTTTTTGATCAAATGAGACGGGGAATGATTGAAGAAGGGAAAGCGACACTCAGAATGAAGCAAGACATGCAGAGTGATAATTATAATATGTATGATCTCATTGCATATCGTATCAAGTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCGCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGAATGTCACTAACACAGTGATGTCAAAGCGTAAGTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGTGATAGTAGTATGATACGTTTGGACCGCCTTGAGTTTCATATAAGAGAAGAACTAAACAAAACAGCACCTCGCATGATGGTTGTGCTACATCCACTTAAGGTTGTTATTACCAACCTTGAAGTTGGTTCAACGATGGATCTTGATGCAAAGAAATGGCCTGATGCTCAAATAGAAGATTCGTCTTCCTTTTACAAGGTTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGATATGCTTTCCCTATAAAGTGCACAGAAGTTATCCTCAGTGATGATAAAGAAACTGTTGTTGAGGTCTGGGCTGAATTTGATCCTTCAAAGAAGACAAAGCCAAAGGGAGTTCTTCACTGGGTTGCAGAACCTTCTCCTGGGATTGATCCACTTAAGGTTGAAGTGAGGCTGTTTGACAAACTCTTCCTTTCTGAGAATCCTGCTGAACTTGACAATTGGCTTGCTGATCTGAACCCGGAGTCCAAAGTGGTGATACCTGGAGCATATGCTGTGCCTTCACTTCGAACTGCTGCAGTTGGGGACAGATTTCAGTTTGAAAGGCTTGGTTATTTTGTGGTAGATAAGGACTCCACTTCTGAAAAACTTGTCTTCAATCGTACGGTTACACTACGAGATAGCTACAGCAAAGGTGGGAAATAG 2376 41.33 MVVEDDNSEKPLDLFLKIGLDERTARNTIANNKVTANLTAVIHEAALTNGCNRTVGNLLYTVATKFPANALVHRPTLLQYIVSSKIKTPAQLEAAFSFYSSIGSENFELKEFEESCGVGIDVPIEDIERTVNEIFEENKNVILGQRYQTNVGDLFGHVRKSHPWADPKIVKQLIDVKLYGLLGEKTAADDEKPSRKKKEKQAKSESIAVDTHPPPTSEEELNPFLIFPQPEENFKVHTEIFFSDRPVLRVCNTREMLEKHLKATGGRVFTRFPPEPNGYLHIGHAKAMFVSFGLAKERDGCCYLRYDDTNPEAEKKEYIDHIDEIVRWMGWEPFKVTYTSDYFQDLYDLAVELIRRNHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLELFDQMRRGMIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHSGDKWCIYPSYDYSHCIVDSLENITHSLCTLEFETRRASYYWLIDALGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTERWVDGWDDPRLMTLAGLRRRGVTSTSINAFVRGIGITRSDSSMIRLDRLEFHIREELNKTAPRMMVVLHPLKVVITNLEVGSTMDLDAKKWPDAQIEDSSSFYKVPFSNIVYIEHTDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETVVEVWAEFDPSKKTKPKGVLHWVAEPSPGIDPLKVEVRLFDKLFLSENPAELDNWLADLNPESKVVIPGAYAVPSLRTAAVGDRFQFERLGYFVVDKDSTSEKLVFNRTVTLRDSYSKGGK* 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3379862 3395733 - Vvi1g328 Vvi1g328 769528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g328 791 CDD GlnRS_core 267 577 - -
Vvi1g328 791 PRINTS Glutamyl-tRNA synthetase signature 271 283 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g328 791 PRINTS Glutamyl-tRNA synthetase signature 300 313 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g328 791 PRINTS Glutamyl-tRNA synthetase signature 445 455 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g328 791 MobiDBLite consensus disorder prediction 188 206 - -
Vvi1g328 791 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 167 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vvi1g328 791 MobiDBLite consensus disorder prediction 188 218 - -
Vvi1g328 791 SUPERFAMILY Ribosomal protein L25-like 575 785 IPR011035 GO:0006412
Vvi1g328 791 Gene3D Ribosomal Protein L25; Chain P 700 784 IPR020056 -
Vvi1g328 791 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 274 285 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi1g328 791 PANTHER OS05G0182800 PROTEIN 10 790 - -
Vvi1g328 791 Gene3D - 6 120 IPR042558 -
Vvi1g328 791 Gene3D HUPs 240 578 IPR014729 -
Vvi1g328 791 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 575 766 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vvi1g328 791 Gene3D Ribosomal Protein L25; Chain P 579 698 IPR020056 -
Vvi1g328 791 TIGRFAM glnS: glutamine--tRNA ligase 268 788 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vvi1g328 791 Pfam tRNA synthetases class I (E and Q), catalytic domain 268 572 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vvi1g328 791 SUPERFAMILY Nucleotidylyl transferase 268 581 - -
Vvi1g328 791 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 170 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vvi1g328 791 Gene3D - 121 190 IPR042559 -
Vvi1g328 791 PANTHER GLUTAMINE-TRNA LIGASE 10 790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g328 K01886 QARS, glnS; glutaminyl-tRNA synthetase [EC:6.1.1.18] - vvi:100245668 1614.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58