Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g329 ATGAATTTCATTTGTTCGTGTTCAGTATGCAGAAATGCCATGATTAAGAATGCATACTCTAGGATGCTGAAATTAGTTGAGAGTCGAGAGATTCTGGATCGGACCCATGAATCTGGACCCACATTTGTCAATGAATCCCGTGAATGTGGGGAGGCTTTGACTCTCAAGTCGTGGATCTCTCGGAACCCCAATGTGCTCGGCAATGAGGTTTTGAACAAGTGGGGCTGTGATCTTCCTTTCTTGTTCAAGGTGCTTTCGGTTGGAAAGGCTTTATCAAGGCAGGCTCACCCAGATAAAGAATTGGCAGAGACTCTGCATGAGTTGCAGCCAAATATTTATATGAATGGTAATCACAAGCCTGAAATGGCCTTGGCACTTACAGAGTTTGAGGCCCTGCATGGGTTTATTGGTCTCAAGGAGCTCAAGGATGTGCTTTGTGGTGTCCCTGAGATTGTAGAATTGATTGGGAAGGCAGATGCGGAGCAAGTCTTACGTGCCAATGAACATGTGGGGGAAGAAAAAGTGAAAGCAGTTTTAGAGTTTATCTTCACTCAATTGATGTCATCAAACAAAGATACAATATCTGAACTGATATTCAAAATAAAACCACGTCTGAATATGGAAAAGGAGGTAAAGATGGTAAGTTATTTAACTTTTTTGGTGCTGAGATTGGAGGGTCAATATCCCACCGATGTGGGTGTCATAGCATCACCATTTCTAAACCATGTGAAACTAAACTCTGGTTTTCTAGGGGCAAATGAACCTAATGCATACATCCCTGGTGAATGTACTGAATGCATGGCAACCTTGGACAATGTCGTTCGTGCTGGCCTTACCTCTAAACACCAGGATATCCGAAAACTTTTTTCCATGCTCACATACCAACAGGGGTTTCCTGAAATTCTGGTTGGAGTTTCCATGAACCCATACACCAAACGATACCTCCCACCCTTTGATGAATTTGAAGTTGATTGCTGTATTCTTCCTCAGGCTGCATCAGTGGTCTTTCCATCCGTCCCAGGACCATCACCATTTCTAATCATGGCTGGGAAGGGAACAATTCATGCAGGGTTTGCTGGAGAACATGTGATTGGAGAGGGTTCGGTTCTCTTTGTGCCTGCCAATATGGAGATTAGGATAGCGGCTTCATCCATGGAGTTACAATTGTATAGGGCTGGACGACCTGATACTAAAAACAATTAG 1203 43.56 MNFICSCSVCRNAMIKNAYSRMLKLVESREILDRTHESGPTFVNESRECGEALTLKSWISRNPNVLGNEVLNKWGCDLPFLFKVLSVGKALSRQAHPDKELAETLHELQPNIYMNGNHKPEMALALTEFEALHGFIGLKELKDVLCGVPEIVELIGKADAEQVLRANEHVGEEKVKAVLEFIFTQLMSSNKDTISELIFKIKPRLNMEKEVKMVSYLTFLVLRLEGQYPTDVGVIASPFLNHVKLNSGFLGANEPNAYIPGECTECMATLDNVVRAGLTSKHQDIRKLFSMLTYQQGFPEILVGVSMNPYTKRYLPPFDEFEVDCCILPQAASVVFPSVPGPSPFLIMAGKGTIHAGFAGEHVIGEGSVLFVPANMEIRIAASSMELQLYRAGRPDTKNN* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3396141 3407109 - Vvi1g329 Vvi1g329 769529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g329 400 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 35 399 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 PIRSF PMI 34 400 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 Gene3D Phosphomannose Isomerase, domain 2 137 300 - -
Vvi1g329 400 TIGRFAM manA: mannose-6-phosphate isomerase, class I 34 382 IPR001250 GO:0004476|GO:0005975|GO:0008270
Vvi1g329 400 CDD cupin_RmlC-like 345 386 - -
Vvi1g329 400 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 35 399 - -
Vvi1g329 400 Gene3D Jelly Rolls 301 392 IPR014710 -
Vvi1g329 400 CDD cupin_PMI_type_I_N 78 294 - -
Vvi1g329 400 Pfam Phosphomannose isomerase type I, catalytic domain 34 135 IPR046457 -
Vvi1g329 400 Gene3D Jelly Rolls 35 276 IPR014710 -
Vvi1g329 400 PRINTS Phosphomannose isomerase type I signature 78 99 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 PRINTS Phosphomannose isomerase type I signature 113 136 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 PRINTS Phosphomannose isomerase type I signature 256 275 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 PRINTS Phosphomannose isomerase type I signature 275 294 IPR016305 GO:0004476|GO:0009298
Vvi1g329 400 SUPERFAMILY RmlC-like cupins 35 385 IPR011051 -
Vvi1g329 400 Pfam Phosphomannose isomerase type I, helical insertion domain 161 239 IPR046458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g329 K01809 manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8] - rcu:8286633 459.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g329 Vvi14g872 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g329 Blo01g00502 . Bda01g02070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02261 . . . Cmo04g02163 Cmo15g00956 Cma04g02066 Cma15g00917 Car04g02006 Car15g00860 Cpe13g00402 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006587 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 38