Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g33 ATGGAGAAGAACCCGAGAGATCTGTTGCAGAGGTTGATGGGGAACAGTGGAGAGCAGTCGCAGTACGCGTCCATGGTGAAGGGAGAGGATGACCCAGAAGAGATAGAGTTGAATCTTGGGCTGTCACTGGGTGGGAGATTCGGAGTGGACAAGAGCGAGAAGAAGCTAATGAGGTCGTCTTCAATTGCTGGTTCGATAGGGATAACGAGGGACGAGGATGCGCTGGTGACTCCCGCTGTTTCGTACTCTAGTCTGATGAGGACTTCTTCACTTCCGACTGAGACCCAAGAAGAGTGGAGGAAGAGGAAGGAGTTGCAGACACTGAGGCGGATGGAGGCCAAGAGGAGGCGCTCCGAGAAGCAGAGGAATAAGGAGGGCTGTGTCGAGGATGAAAAGCGCGATTTAGATAGCCCAATTGTGGGTTTCAGATCAAACATTGAGAAAGCACATCACTATGTGGCCGCCAATAGGTCGGCTGCTGCATTTGGGTTCCCCACTTGGGCGGCGGCGGCTGCTGCTGCGAAAGGGAAGGGTAGTGGTAGTTTACAAAACTTCGTGCAGCAGACTTCCCAGGGCTCGGGAGAATCCCAAGGGGGGAGCTCTTCAAGCATGTCGGAATTGGAGAGCAAGCCTCTTCAAGGGTACAGCAGCTGTGGCGAAGCGAGAAGCCTTGCTTGCAATCAGTCATTGCAAGAGCAAAGCATTCAGGAGGCCTCAGGTTCTTCCAGGACAAAGCCAAATGAAGGTACAGGCAGAACTTCTGGAGCTGAGATGGAGAATCCATCTAAGAATCCTGGTTTATCAGAAAATAGAGGGAGGGGAAGTGGGATGAATTTTATGGGGGATATGCCTTGTGTTTTTACGAGGGGAGACGGTCCAAATGGAAGAAGAATAGAAGGAATTCTATATAAGTATGGAAAGGGGGAGGAAGTGAGAATAATGTGTGTATGCCATGGTAGCTTTCTGTCCCCAGCAGAGTTTGTGAAGCATGCTGGTGGGGGTGATGTTGCCCACCCACTTAGGCATATAGTTGTAAACCCCTCCTCTGCTTCTTTCGTATAA 1062 50.94 MEKNPRDLLQRLMGNSGEQSQYASMVKGEDDPEEIELNLGLSLGGRFGVDKSEKKLMRSSSIAGSIGITRDEDALVTPAVSYSSLMRTSSLPTETQEEWRKRKELQTLRRMEAKRRRSEKQRNKEGCVEDEKRDLDSPIVGFRSNIEKAHHYVAANRSAAAFGFPTWAAAAAAAKGKGSGSLQNFVQQTSQGSGESQGGSSSSMSELESKPLQGYSSCGEARSLACNQSLQEQSIQEASGSSRTKPNEGTGRTSGAEMENPSKNPGLSENRGRGSGMNFMGDMPCVFTRGDGPNGRRIEGILYKYGKGEEVRIMCVCHGSFLSPAEFVKHAGGGDVAHPLRHIVVNPSSASFV* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 433720 439652 + Vvi1g33 Vvi1g33 769233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g33 353 PANTHER NINJA-FAMILY PROTEIN AFP1 1 350 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 229 271 - -
Vvi1g33 353 Pfam Putative nuclear localisation signal 85 209 IPR032310 -
Vvi1g33 353 MobiDBLite consensus disorder prediction 183 216 - -
Vvi1g33 353 Pfam Tify domain binding domain 311 345 IPR032308 -
Vvi1g33 353 MobiDBLite consensus disorder prediction 183 212 - -
Vvi1g33 353 PANTHER AFP HOMOLOG 2 1 350 IPR031307 GO:0007165
Vvi1g33 353 Coils Coil 101 121 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 111 132 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 229 275 - -
Vvi1g33 353 Pfam Ethylene-responsive binding factor-associated repression 30 64 IPR012463 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g33 Vvi14g1029 ECH
Vvi1g33 Vvi17g464 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g33 - - vvi:100245623 641.343