Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g33 ATGGAGAAGAACCCGAGAGATCTGTTGCAGAGGTTGATGGGGAACAGTGGAGAGCAGTCGCAGTACGCGTCCATGGTGAAGGGAGAGGATGACCCAGAAGAGATAGAGTTGAATCTTGGGCTGTCACTGGGTGGGAGATTCGGAGTGGACAAGAGCGAGAAGAAGCTAATGAGGTCGTCTTCAATTGCTGGTTCGATAGGGATAACGAGGGACGAGGATGCGCTGGTGACTCCCGCTGTTTCGTACTCTAGTCTGATGAGGACTTCTTCACTTCCGACTGAGACCCAAGAAGAGTGGAGGAAGAGGAAGGAGTTGCAGACACTGAGGCGGATGGAGGCCAAGAGGAGGCGCTCCGAGAAGCAGAGGAATAAGGAGGGCTGTGTCGAGGATGAAAAGCGCGATTTAGATAGCCCAATTGTGGGTTTCAGATCAAACATTGAGAAAGCACATCACTATGTGGCCGCCAATAGGTCGGCTGCTGCATTTGGGTTCCCCACTTGGGCGGCGGCGGCTGCTGCTGCGAAAGGGAAGGGTAGTGGTAGTTTACAAAACTTCGTGCAGCAGACTTCCCAGGGCTCGGGAGAATCCCAAGGGGGGAGCTCTTCAAGCATGTCGGAATTGGAGAGCAAGCCTCTTCAAGGGTACAGCAGCTGTGGCGAAGCGAGAAGCCTTGCTTGCAATCAGTCATTGCAAGAGCAAAGCATTCAGGAGGCCTCAGGTTCTTCCAGGACAAAGCCAAATGAAGGTACAGGCAGAACTTCTGGAGCTGAGATGGAGAATCCATCTAAGAATCCTGGTTTATCAGAAAATAGAGGGAGGGGAAGTGGGATGAATTTTATGGGGGATATGCCTTGTGTTTTTACGAGGGGAGACGGTCCAAATGGAAGAAGAATAGAAGGAATTCTATATAAGTATGGAAAGGGGGAGGAAGTGAGAATAATGTGTGTATGCCATGGTAGCTTTCTGTCCCCAGCAGAGTTTGTGAAGCATGCTGGTGGGGGTGATGTTGCCCACCCACTTAGGCATATAGTTGTAAACCCCTCCTCTGCTTCTTTCGTATAA 1062 50.94 MEKNPRDLLQRLMGNSGEQSQYASMVKGEDDPEEIELNLGLSLGGRFGVDKSEKKLMRSSSIAGSIGITRDEDALVTPAVSYSSLMRTSSLPTETQEEWRKRKELQTLRRMEAKRRRSEKQRNKEGCVEDEKRDLDSPIVGFRSNIEKAHHYVAANRSAAAFGFPTWAAAAAAAKGKGSGSLQNFVQQTSQGSGESQGGSSSSMSELESKPLQGYSSCGEARSLACNQSLQEQSIQEASGSSRTKPNEGTGRTSGAEMENPSKNPGLSENRGRGSGMNFMGDMPCVFTRGDGPNGRRIEGILYKYGKGEEVRIMCVCHGSFLSPAEFVKHAGGGDVAHPLRHIVVNPSSASFV* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 433720 439652 + Vvi1g33 Vvi1g33 769233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g33 353 PANTHER NINJA-FAMILY PROTEIN AFP1 1 350 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 229 271 - -
Vvi1g33 353 Pfam Putative nuclear localisation signal 85 209 IPR032310 -
Vvi1g33 353 MobiDBLite consensus disorder prediction 183 216 - -
Vvi1g33 353 Pfam Tify domain binding domain 311 345 IPR032308 -
Vvi1g33 353 MobiDBLite consensus disorder prediction 183 212 - -
Vvi1g33 353 PANTHER AFP HOMOLOG 2 1 350 IPR031307 GO:0007165
Vvi1g33 353 Coils Coil 101 121 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 111 132 - -
Vvi1g33 353 MobiDBLite consensus disorder prediction 229 275 - -
Vvi1g33 353 Pfam Ethylene-responsive binding factor-associated repression 30 64 IPR012463 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g33 - - - vvi:100245623 641.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g33 Vvi14g1029 ECH
Vvi1g33 Vvi17g464 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g33 . . . . . Bpe10g00900 Bma14g01666 Bma15g00131 Cmo04g01789 Cmo18g01124 . Cma18g01103 . Car18g01017 Sed06g1778 Cpe09g00223 Cpe01g01507 Bhi07g01484 Tan04g0992 Cmetu10g1842 Lac13g0380 Hepe10g1799 . . Cla05g02390 . . Cco05g2637 Clacu05g2564 Cmu05g2421 Cre05g2538 Cone13ag0904 Cone19ag0901 . . Lsi04g00361 Csa05g02516 Chy10g01060 Cme10g00355 Blo06g00928 Blo11g00794 . . . . . . . . . Cma04g01704 . Car04g01739 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006440 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38