Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g330 ATGAAAACTTGTATAGAATTTTTAGGCGAGAGAGTAAGCGAGTTGAAGACGATGGGTCCGGAAAGATCGAAACCTCTCCACAATTTCGCGATGCCGAGCTTGAAGTGGGGAAATCAGAGGTTCCTAAGGTGCATGAAAGTGAATTCCAATGGCGAAGTGGCCGCCGATGATGGCAGATCTTCGGATTTGGTTAGGGGTAGGCGAGAATCCGAGTCGGAGAAACGAAAGGGGGATGAGATCGACGGCGACGACGGAATCGAAGCGGTGAGGGCGAAGCTGATGTTCGATCTTCAAGCAGCCGCCGACAAGATGAAGGTGGCTATTTTCAAGGACGGGGAAGAGGAGGACTCCTCGAGGCGAAAGCCTGGTACTTCGCCGTCGAGGACTGATGTGTCGGCGCCTAGAAGAGGTGAGAAGAAAGAGAGGGCAAAGTTCTCGGTTTCACTTTCTCGGCAAGAGATTGAGGAGGATTTTATGGCCATAACGGGACACAGGCCCGCGAGGAGGCCGAAGAAGAGGGCAAAGAATGTGCAGAAGCAATTGGATACGCTTTTCCCAGGCTTGTGGTTGACCGAAGTTACACCAGATTCATACAAAGTTCCCGACTTTCCTGAAACCGGAAAGAGATAG 630 51.43 MKTCIEFLGERVSELKTMGPERSKPLHNFAMPSLKWGNQRFLRCMKVNSNGEVAADDGRSSDLVRGRRESESEKRKGDEIDGDDGIEAVRAKLMFDLQAAADKMKVAIFKDGEEEDSSRRKPGTSPSRTDVSAPRRGEKKERAKFSVSLSRQEIEEDFMAITGHRPARRPKKRAKNVQKQLDTLFPGLWLTEVTPDSYKVPDFPETGKR* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3407114 3417751 - Vvi1g330 Vvi1g330 769530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g330 209 MobiDBLite consensus disorder prediction 132 148 - -
Vvi1g330 209 Pfam Protein of unknown function (DUF1639) 149 198 IPR012438 -
Vvi1g330 209 MobiDBLite consensus disorder prediction 58 82 - -
Vvi1g330 209 MobiDBLite consensus disorder prediction 112 148 - -
Vvi1g330 209 PANTHER OS01G0688600 PROTEIN 128 202 - -
Vvi1g330 209 PANTHER OS01G0688600 PROTEIN 15 119 - -
Vvi1g330 209 MobiDBLite consensus disorder prediction 52 82 - -
Vvi1g330 209 PANTHER PUTATIVE (DUF1639)-RELATED 128 202 - -
Vvi1g330 209 PANTHER PUTATIVE (DUF1639)-RELATED 15 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g330 - - - vvi:100244117 342.813
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g330 Vvi17g300 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g330 . . Bda01g02068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0819 Cone19ag0825 . Cone9ag0452 . . . . . . . . . Bpe02g02259 . . . . Cmo15g00959 . Cma15g00920 . Car15g00862 Cpe13g00400 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004927 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41