Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g335 ATGTTGCCATGGGTTACATCTGTTCTTACTGAGGAAGAGCAGAACAAAATGATGGACACATGGAAGCAGGCAACAAAGAACACAATGTTTAGTGAGTGGCTTAATGAATGGTGGGAAGGAACTGCTGCTGCATCTCCACTGGCCTTTACATCAGAAAATAAGATTTCACAAGGCATCAATGTTCATGAAAGCCTGGACCACAGTGATCATACTTTCAAGCCTGGCTGGAAAGATATTTTTCGGATGAATGAAAATGAGCTTGAATCAGAGATAAGAAAAGTTTCTCGGGATTCAACTCTTGATCCAAGGAGAAAAGATTATCTTATTCAAAATCTTATGACAAGTCGCTGGATAGCTGCTCAGCAAAAGTTACCTCAAGCAAGGACAGTTGAAACTTCAAATGGTGAGAATGTGCTTGGATGCATTCCATCATTTCGAGATCCAGATAAGCAAATATTTGGGTGTGAGCATTACAAGAGGAACTGCAAACTCCGTGCTTCATGCTGTGGCAAGTTGTTTGCTTGCAGGTTTTGCCATGATAAAGTCAGCGATCATTCAATGGATAGGAAGGCTACATCTGAAATGATGTGTATGTTCTGCCTAAGAATCCAGCCTATTGGACCAATTTGCACAACACCTTCCTGTGGTGGATTGTTGATGGCAAAATATTATTGCAGCATCTGCAAATTTTTTGATGATGAGAGGACAGTTTATCATTGCCCATTTTGCAACTTGTGCCGTGTTGGGAAGGGACTTGGTGTTGACTTCTTTCATTGCATGACATGCAATTGTTGTCTGGCCATGAAGTTGGCTGACCACAAGTGCCGGGAGAAAGGCTTAGAAACAAACTGCCCCATCTGCTGTGATGACATGTTCTCATCAAGTGCGGTTGTACGAGCTCTTCCTTGTGGCCATTTCATGCATTCAGCTTGCTTCCAGGCATACACTTGCAGTCACTATATTTGTCCAATTTGTAGCAAATCCTTGGGAGATATGGCAGTTTACTTTGGTATGCTTGATGCATTATTAGCTTCTGAGGCGCTTCCTGAAGAATACAGGGATCGCTGTCAGGACGTACTGTGCAATGACTGTGGTAAGAAGGGAACCTCGCCTTTTCACTGGCTGTACCACAAATGCAGGTTTTGTGGATCTTATAATACCAGGGTAATCAAGGTTGACTCGACAAATTTGGACTGCTCAACATCAAACTAG 1212 42.66 MLPWVTSVLTEEEQNKMMDTWKQATKNTMFSEWLNEWWEGTAAASPLAFTSENKISQGINVHESLDHSDHTFKPGWKDIFRMNENELESEIRKVSRDSTLDPRRKDYLIQNLMTSRWIAAQQKLPQARTVETSNGENVLGCIPSFRDPDKQIFGCEHYKRNCKLRASCCGKLFACRFCHDKVSDHSMDRKATSEMMCMFCLRIQPIGPICTTPSCGGLLMAKYYCSICKFFDDERTVYHCPFCNLCRVGKGLGVDFFHCMTCNCCLAMKLADHKCREKGLETNCPICCDDMFSSSAVVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEALPEEYRDRCQDVLCNDCGKKGTSPFHWLYHKCRFCGSYNTRVIKVDSTNLDCSTSN* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3450806 3467015 - Vvi1g335 Vvi1g335 769535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g335 403 Pfam CHY zinc finger 155 230 IPR008913 GO:0008270
Vvi1g335 403 Gene3D - 355 400 - -
Vvi1g335 403 ProSiteProfiles Zinc finger RING-type profile. 284 326 IPR001841 -
Vvi1g335 403 ProSiteProfiles Zinc finger CTCHY-type profile. 220 283 IPR017921 -
Vvi1g335 403 SUPERFAMILY Zinc hairpin stack 221 276 IPR037275 -
Vvi1g335 403 SUPERFAMILY CHY zinc finger-like 149 211 IPR037274 GO:0008270
Vvi1g335 403 Pfam Ring finger domain 283 325 IPR001841 -
Vvi1g335 403 SUPERFAMILY RING/U-box 283 329 - -
Vvi1g335 403 ProSiteProfiles Zinc finger CHY-type profile. 148 217 IPR008913 GO:0008270
Vvi1g335 403 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 1 400 - -
Vvi1g335 403 SMART ring_2 284 325 IPR001841 -
Vvi1g335 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 328 IPR013083 -
Vvi1g335 403 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 400 - -
Vvi1g335 403 Pfam Zinc-ribbon 331 388 IPR039512 -
Vvi1g335 403 CDD RING-H2_Pirh2 283 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g335 Vvi17g299 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g335 K16276 - vvi:100255880 877.47