Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g336 ATGGCGACGCCATTGACAGGGCTTCAACATAGAGATGGAGGTTTGGGTCTGATGGCGGGGCCTGCCAACCAAATGGATTCTTCTCCTTCGAAGAGTTGCTTGAAGAGCTCAGCTCTCAAGTCTCCTATTCTCATCTTCTTGTTCTTCCACAAGGCCATCCGTTCGGAGCTCGATGGCCTGCATCGTGCGGCCATGGATTTTGCTACTAATCAGGACAGTGATATTAATCCTTTGTTGGAACGCTACCACTTTTTTCGCGCAATCTACAAGCACCACTGTAATGCTGAGGACGAGGTCATATTTCCAGCTCTTGATAGACGTGTGAAGAATGTTGCACGGACTTACTCCCTTGAACATGAGGGAGAAAGTGCCCTTTTTGATCAACTATTCGAGCTGTTGAATTCAAAAACTCAAAACGAAGAAAGCTATCGGAGAGAGTTAGCCTTATGCACCGGAGCTCTTCAAACTTCAATTAGTCAGCACATGTCCAAGGAAGAGGAACAAGTGTTCCCCTTGCTGATTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTGATTTGGCAGTTTCTGTGCAGCATTCCTGTTAATATGATGGCAGAGTTCCTTCCGTGGCTTTCTTCCTCTATTTCATCTGATGAACATCAAGATATGCATAAATGCTTGTGCAAGATAGTCCCAGAAGAGAAGCTTCTTCAACAGGTTATTTTCACCTGGATGGAAAATATTCAGAAAAGTTGTGAAGATAATCCTAATGACAGAGGTCCTGATTCTGGGGCCAGAACCTTAATCAGTCGAACTAAGAACTGGCAATGTGCATGTGAATCTTTGAAAACTGGTAAAAGGAAATATTTGGAGCCCAATAATGTTACAACTGCTTCAACTCTGGCATGTCCAATAGATGAAATATTGCATTGGCATAAAGCAATAAAAAGAGAGTTGAATGATATAGCAGAGGCAGCAAGGAAGATACAACTTTTTGGAGATTTCTCTGATTTATCTGCTTTCAACAAGAGGCTGTTGTTTATTGCAGAAGTTTGTATTTTTCACAGTATTGCTGAAGACAAAGTTATATTCCCTGCCGTAGATGCAGAACTCTCTTTTGCCCAGGAGCATGCAGAAGAAGAAAGCCAATTTGATAAACTTAGGTGCTTGATAGAAAGCATACAAAGTGCCGGAGCCAACTCATCTTCTGCTGAATTTTATACAAAGTTATGCTCACAGGCTGATCAAATAATGGATACGATACAGAAGCACTTTCACAATGAAGAAGTTCAGGTTCTTCCACTTGCTCGAAAGCATTTTAGCCCCAAAAGACAGCGTGAACTTCTGTATCAAAGCCTATGTGTGATGCCCTTAAGATTGATTGAGTGTGTCCTGCCATGGTTGGTTGGATCCCTTGATGAAGAAGCAGCAAGGTCTTTTCTTCAAAATATGCATTTGGCAGCTCCAGCTTCAGATAATGCACTTGTTACACTTTTTTCTGGCTGGGCATGCAAAGGCCGCTCTAGGGATGCATGCTTGTCTTCTGGTGCAGTTGGTTGCTGTCTTGCCAAAATACTGACCACAACCACAGGAGATCCTGATCAGTCTTTTTGTGCATGCACCCCTTTGTTTTCTGCTAAGGAAAATTCTACATCAGATCACTTGGATGATGATGAAAGGCCAGTTAAGCGTGGAAACTGTACTTCATGGGAAGACAGTAATGCTTTGAATAACAGTAATCTAGGAACGGTCTTTTTAATTGGGAAACAGATGTAA 1758 42.26 MATPLTGLQHRDGGLGLMAGPANQMDSSPSKSCLKSSALKSPILIFLFFHKAIRSELDGLHRAAMDFATNQDSDINPLLERYHFFRAIYKHHCNAEDEVIFPALDRRVKNVARTYSLEHEGESALFDQLFELLNSKTQNEESYRRELALCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLIWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMHKCLCKIVPEEKLLQQVIFTWMENIQKSCEDNPNDRGPDSGARTLISRTKNWQCACESLKTGKRKYLEPNNVTTASTLACPIDEILHWHKAIKRELNDIAEAARKIQLFGDFSDLSAFNKRLLFIAEVCIFHSIAEDKVIFPAVDAELSFAQEHAEEESQFDKLRCLIESIQSAGANSSSAEFYTKLCSQADQIMDTIQKHFHNEEVQVLPLARKHFSPKRQRELLYQSLCVMPLRLIECVLPWLVGSLDEEAARSFLQNMHLAAPASDNALVTLFSGWACKGRSRDACLSSGAVGCCLAKILTTTTGDPDQSFCACTPLFSAKENSTSDHLDDDERPVKRGNCTSWEDSNALNNSNLGTVFLIGKQM* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3467055 3473568 - Vvi1g336 Vvi1g336 769536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g336 585 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 573 - -
Vvi1g336 585 CDD Hr-like 45 171 - -
Vvi1g336 585 Pfam Hemerythrin HHE cation binding domain 298 430 IPR012312 -
Vvi1g336 585 Pfam Hemerythrin HHE cation binding domain 47 173 IPR012312 -
Vvi1g336 585 CDD Hr-like 300 428 - -
Vvi1g336 585 Gene3D nmb1532 protein domain like 41 190 - -
Vvi1g336 585 Gene3D nmb1532 protein domain like 299 446 - -
Vvi1g336 585 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 32 573 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g336 K16276 - vvi:100255880 1147.88