Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g338 ATGAACGATAAAGAGCTGATGTGGCGAGCATCAATGGTTCCTCATTTTGTGGATTACCCATATGATCGGACCCCAAAAGTGGCATTCATGTTTTTAAGCAGGGGAAGATTGCCATTGGCATCACTTTGGGAGAAGTTCTTCAAAGGTCATGCAGGGCTATACTCAATTTACCTCCATACTTCACCAGAATTCAACACTGAGATGCCAGAATCCTCGGTGTTTTACAAGCGCAGAATACCAAGCAAGTCAGTTGACTGGGGAAAGGCAACAATGGTGGATGCTGAGAGGCGCCTGCTAGCGAATGCCCTCCTTGACTTCTCCAATGAGAGATTTGTTCTACTCTCAGAGACATGCATTCCTTTATTCAACTTCACCACCATCTACAAATACCTCATCAACTCTAACCACAGCTTTGTCAGCTCTTTTGATGATCCTAGACACATCGGCCGTGGCCGTTACAACAAACGAATGTTTCCAACTGTGACATTGCCTGATTGGCGCAAAGGGTCCCAATGGTTTGAAGTCCACCGGAAGCTCGCCATTGAGATAGTGTCAGATGTGACATACTACCCCATCTTTCAAGAACATTGCAGGCCTCCTTGTTACATGGATGAACACTACTTAGCAACTCTTGTGAATAAGCTCCGCCCAGACCTGAACTCAAATAGGAGCATCACTTGGGTTGATTGGTCCAGGGGTGGCTCACACCCAACAAAGTTTGTGAGGAAGGATGTTTCAGAAGCGTTTCTGAATCAGGCAAGACATGGGTTTAATTGTTCTTATAATAGTGGTTTGAGCTCTATTTGCTTCCTTTTTGCCAGGAAATTTCATCCTAGCACTCTAGAGCCTTTGCTAAGGATAGCTCCCTCACTGCTTGGTTTTGACCCCTAG 891 45.45 MNDKELMWRASMVPHFVDYPYDRTPKVAFMFLSRGRLPLASLWEKFFKGHAGLYSIYLHTSPEFNTEMPESSVFYKRRIPSKSVDWGKATMVDAERRLLANALLDFSNERFVLLSETCIPLFNFTTIYKYLINSNHSFVSSFDDPRHIGRGRYNKRMFPTVTLPDWRKGSQWFEVHRKLAIEIVSDVTYYPIFQEHCRPPCYMDEHYLATLVNKLRPDLNSNRSITWVDWSRGGSHPTKFVRKDVSEAFLNQARHGFNCSYNSGLSSICFLFARKFHPSTLEPLLRIAPSLLGFDP* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3514021 3515031 + Vvi1g338 Vvi1g338 769538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g338 296 Pfam Core-2/I-Branching enzyme 27 252 IPR003406 GO:0016020|GO:0016757
Vvi1g338 296 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 1 293 - -
Vvi1g338 296 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 1 293 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g338 - - - vvi:100250702 623.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g338 Vvi17g297 ECH
Vvi1g338 Vvi14g864 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58