Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g34 ATGAGATGGGATTGTGGCTTTTGTAAAACCCTAGCTTGGTTGGATCTGTTGTTTCTCTTCTGCGTTTTTTTTTCGGTTTATGGAAGGGTGTTTTCGGGGGAAGTGGTTTCCGAGAGGGAGATTCTTCTCGAATTCAAGAGCTCAGTGTCTGATCCGTATGGGGTTCTGTCCAGCTGGAGCTCAGAGAACTTGGATCACTGTTCTTGGGCCGGCATCTCCTGCGACTCCAATTCTAGGTTTCCGTTTCATGGTTTTGGAATCAGAAGGGATTGTTTTAATGGGAGTGGGAGGTTGGTCGGAGAACTGTCTCCGGTGGTCTCGAAACTCACTGAACTTAGGATTTTTTCGCTTCCTTTTCATGAATTTAGTGGTGAAATTCCTAATGAAATATGGGGTTTAGAAAAGTTAGAGGTACTTGATCTTGAGGGCAATGCATTTACCGGAAATTTGCCTGGCGAATTCTCTGGTTTGAGGAAATTGCAGGTGTTAAACCTTGGATTTAATATAATTGCTGGGGAGATTCCGTTTTCACTGTCAAATTGTGTTAATTTGCGGATTTTGAATTTAGCTGGGAATGAAGTGAACGGAAGAATTCCAGGGTTTATTGGTAGTTTTCCCAAGTTACAGGGGCTTTATTTGTCTCACAATGGGATGATTGGAACAGTTCCGAGCTTGGGGAATTGTAGACGGTTACGAACACTTTTGTTGTTCTCAAATAAGTTTGATGATGTCATTCCTCGTGAGCTCGGTCGTCTGCGGAAGCTTGAGGTTCTAGATTTTGATACCGCTGATGATAAAAATCATTTCCAAGGTTCCATTCCTATGGAAATTACAACCCTTCCAAAGCTAAGACTACTGTGGGCGCCTAGGGCAACACTTGAAGGCAAGTTTCCCAGCAATTGGGGCACTTGCAGCAGCTTGGAAATGCAGACTGAATATGCGTTTCTTGCTGGTGGGAATAGACTCTTTGGATCTTTTCCTGGAAACTTCTTTGGACAATGCAACAGATTGAATGGATTGCTCGTTAATGTCAGCGACAACCGGATATCTGGTGTGTTAGAGACTGGTACAATCTGCAGATCTCTTAAGTTTTTGGATGTCTCTAAGAACCAGATTTCTGGTTCAATACCTCGAGGTCTTGGAGATTTGCAATCTCTCATTGTTCTTGATTTGAGTGGGAACAAATTGCAAGGTCAGATTCCTTTCTTCTGA 1212 42.99 MRWDCGFCKTLAWLDLLFLFCVFFSVYGRVFSGEVVSEREILLEFKSSVSDPYGVLSSWSSENLDHCSWAGISCDSNSRFPFHGFGIRRDCFNGSGRLVGELSPVVSKLTELRIFSLPFHEFSGEIPNEIWGLEKLEVLDLEGNAFTGNLPGEFSGLRKLQVLNLGFNIIAGEIPFSLSNCVNLRILNLAGNEVNGRIPGFIGSFPKLQGLYLSHNGMIGTVPSLGNCRRLRTLLLFSNKFDDVIPRELGRLRKLEVLDFDTADDKNHFQGSIPMEITTLPKLRLLWAPRATLEGKFPSNWGTCSSLEMQTEYAFLAGGNRLFGSFPGNFFGQCNRLNGLLVNVSDNRISGVLETGTICRSLKFLDVSKNQISGSIPRGLGDLQSLIVLDLSGNKLQGQIPFF* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 442140 445496 - Vvi1g34 Vvi1g34 769234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g34 403 Pfam Leucine Rich repeat 359 374 IPR001611 GO:0005515
Vvi1g34 403 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vvi1g34 403 Gene3D Ribonuclease Inhibitor 199 402 IPR032675 -
Vvi1g34 403 Pfam Leucine rich repeat 132 168 IPR001611 GO:0005515
Vvi1g34 403 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 90 261 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 327 401 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 79 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 262 337 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 327 401 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 90 261 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 262 337 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 10 79 - -
Vvi1g34 403 PRINTS Leucine-rich repeat signature 362 375 - -
Vvi1g34 403 PRINTS Leucine-rich repeat signature 383 396 - -
Vvi1g34 403 SUPERFAMILY L domain-like 48 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g34 - - - vvi:100854554 578.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g34 Vvi14g1028 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g34 Blo01g00454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02314 Bma01g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003720 2 1 3 3 3 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 1 1 1 1 0 1 2 37