Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g34 ATGAGATGGGATTGTGGCTTTTGTAAAACCCTAGCTTGGTTGGATCTGTTGTTTCTCTTCTGCGTTTTTTTTTCGGTTTATGGAAGGGTGTTTTCGGGGGAAGTGGTTTCCGAGAGGGAGATTCTTCTCGAATTCAAGAGCTCAGTGTCTGATCCGTATGGGGTTCTGTCCAGCTGGAGCTCAGAGAACTTGGATCACTGTTCTTGGGCCGGCATCTCCTGCGACTCCAATTCTAGGTTTCCGTTTCATGGTTTTGGAATCAGAAGGGATTGTTTTAATGGGAGTGGGAGGTTGGTCGGAGAACTGTCTCCGGTGGTCTCGAAACTCACTGAACTTAGGATTTTTTCGCTTCCTTTTCATGAATTTAGTGGTGAAATTCCTAATGAAATATGGGGTTTAGAAAAGTTAGAGGTACTTGATCTTGAGGGCAATGCATTTACCGGAAATTTGCCTGGCGAATTCTCTGGTTTGAGGAAATTGCAGGTGTTAAACCTTGGATTTAATATAATTGCTGGGGAGATTCCGTTTTCACTGTCAAATTGTGTTAATTTGCGGATTTTGAATTTAGCTGGGAATGAAGTGAACGGAAGAATTCCAGGGTTTATTGGTAGTTTTCCCAAGTTACAGGGGCTTTATTTGTCTCACAATGGGATGATTGGAACAGTTCCGAGCTTGGGGAATTGTAGACGGTTACGAACACTTTTGTTGTTCTCAAATAAGTTTGATGATGTCATTCCTCGTGAGCTCGGTCGTCTGCGGAAGCTTGAGGTTCTAGATTTTGATACCGCTGATGATAAAAATCATTTCCAAGGTTCCATTCCTATGGAAATTACAACCCTTCCAAAGCTAAGACTACTGTGGGCGCCTAGGGCAACACTTGAAGGCAAGTTTCCCAGCAATTGGGGCACTTGCAGCAGCTTGGAAATGCAGACTGAATATGCGTTTCTTGCTGGTGGGAATAGACTCTTTGGATCTTTTCCTGGAAACTTCTTTGGACAATGCAACAGATTGAATGGATTGCTCGTTAATGTCAGCGACAACCGGATATCTGGTGTGTTAGAGACTGGTACAATCTGCAGATCTCTTAAGTTTTTGGATGTCTCTAAGAACCAGATTTCTGGTTCAATACCTCGAGGTCTTGGAGATTTGCAATCTCTCATTGTTCTTGATTTGAGTGGGAACAAATTGCAAGGTCAGATTCCTTTCTTCTGA 1212 42.99 MRWDCGFCKTLAWLDLLFLFCVFFSVYGRVFSGEVVSEREILLEFKSSVSDPYGVLSSWSSENLDHCSWAGISCDSNSRFPFHGFGIRRDCFNGSGRLVGELSPVVSKLTELRIFSLPFHEFSGEIPNEIWGLEKLEVLDLEGNAFTGNLPGEFSGLRKLQVLNLGFNIIAGEIPFSLSNCVNLRILNLAGNEVNGRIPGFIGSFPKLQGLYLSHNGMIGTVPSLGNCRRLRTLLLFSNKFDDVIPRELGRLRKLEVLDFDTADDKNHFQGSIPMEITTLPKLRLLWAPRATLEGKFPSNWGTCSSLEMQTEYAFLAGGNRLFGSFPGNFFGQCNRLNGLLVNVSDNRISGVLETGTICRSLKFLDVSKNQISGSIPRGLGDLQSLIVLDLSGNKLQGQIPFF* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 442140 445496 - Vvi1g34 Vvi1g34 769234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g34 403 Pfam Leucine Rich repeat 359 374 IPR001611 GO:0005515
Vvi1g34 403 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vvi1g34 403 Gene3D Ribonuclease Inhibitor 199 402 IPR032675 -
Vvi1g34 403 Pfam Leucine rich repeat 132 168 IPR001611 GO:0005515
Vvi1g34 403 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 90 261 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 327 401 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 79 - -
Vvi1g34 403 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 262 337 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 327 401 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 90 261 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 262 337 - -
Vvi1g34 403 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 10 79 - -
Vvi1g34 403 PRINTS Leucine-rich repeat signature 362 375 - -
Vvi1g34 403 PRINTS Leucine-rich repeat signature 383 396 - -
Vvi1g34 403 SUPERFAMILY L domain-like 48 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g34 Vvi14g1028 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g34 - - vvi:100854554 578.17