Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g341 ATGGCGAAACCCACTCTCACCAGCTTGCATTTTGCTTTTGCTCTCTTCATCCTCCATTTCTTTCTACTCCACGCTTCTACGAGTTCTGATTTGGAAGCTTTGATGGCGTTCAAAGAAACTGCCGATGCTGCTAACAAGCTCACTACCTGGAACGTAACGGTTAATCCGTGCAGCTGGTACGGCGTTTCCTGTCTCCAGAACAGAGTGTCTCGCCTCGTGCTCGAGGGTCTCGACCTGCAAGGCAGTTTCCAGCCCCTTGCATCTCTCACTCAACTTCGAGTTCTGAGTCTCAAGCGAAACCGCCTCTCTGGCCCTATTCCGAATCTCTCCAACCTCACTGCTCTGAAGCTGCTTTTTCTTTCTTACAATGAGTTCTCGGGGGAGTTTCCCGCTTCCGTCACGTCTCTTTTCCGGCTGTACCGTCTCGATTTGTCTCACAACAACTTATCGGGCCAGATTCCGGAGACAGTCAACCACTTGGCACATATTCTTACTCTGCGTCTGGAAGAAAACCGGTTTTCCGGCAGCATTACAGGTTTGAATCTCCCGAATCTGCAGGACTTCAACGTCTCCGGAAACCGCCTCGCCGGTGATATACCGAAAACTCTTTCCGCGTTCCCTGTGTCCGCCTTTGACCGAAATGCGGTTCTCTGTGGATCTCCCATGCCAACATGCAAGAACGTCGCGGGCGACCCAACGAAACCTGGATCCGGTGGCGCAATCGCATCGCCGCCACAAAATACTCGCCACGGTGCCACAGGAAAAGTAAGTCCAGTGGCCATGATCGCCATCATACTCGGCGACATTTTGGTCCTCGCAATAGTCTCTCTCCTTCTCTACTGCTACTTCTGGCGAAATTACGCTGGAAAAATGAGAGACGGCAAGAGCTCGCAAATCCTCGAGGGGGAAAAAATTGTGTACTCATCCAGCCCATATCCAGCCCAAGCTGGGTACGAGAGGGGTCGAATGGTGTTCTTCGAAGGCGTGAAGCGGTTCGAGCTGGAAGACTTGCTTCGAGCCTCCGCTGAGATGCTGGGCAAAGGAGGCTTCGGAACTGCCTACAAAGCCGTTCTCGACGACGGCAATGTCGTCGCCGTTAAACGACTCAAGGACGCTCACGTTGGAGGGAAACGTGAGTTCGAGCAGCATATGGAGGTGCTGGGACGGTTACGGCACCCTAACGTCGTTAATTTGAGGGCCTATTATTTTGCCAGAGACGAGAAGTTGCTGGTCTATGATTACATGCCTAATGGCAGTCTATTTTGGCTTCTTCACGGGAACCGTGGACCCGGAAGAACGCCTCTGGACTGGACCACGAGGTTGAAGATTGCAGCCGGAGCGGCGCGAGGACTGGCCTTTATTCACAACTCATGCAAGACGCTTAAACTCACCCACGGTAACATCAAGTCCACAAACATCCTCCTTGATAAATGTGGTAGCGCACGAGTTTCCGACTTTGGTCTCTCCGTCTTTGCCTCTTCAACGGCTGCACCCAGATCAAATGGCTACCGTGCCCCTGAAATATTGGACGGCCGAAAGGGCTCCCAGAAGTCTGATGTGTATTCTTTTGGGGTGCTTCTGCTGGAGCTGCTCACAGGAAAGAGTGGTGGATCTTCCACGGTGGGTGCAGTCGGTGGTGAGAGAGGAATGGACAGCGGAGGTGTTTGA 1668 52.76 MAKPTLTSLHFAFALFILHFFLLHASTSSDLEALMAFKETADAANKLTTWNVTVNPCSWYGVSCLQNRVSRLVLEGLDLQGSFQPLASLTQLRVLSLKRNRLSGPIPNLSNLTALKLLFLSYNEFSGEFPASVTSLFRLYRLDLSHNNLSGQIPETVNHLAHILTLRLEENRFSGSITGLNLPNLQDFNVSGNRLAGDIPKTLSAFPVSAFDRNAVLCGSPMPTCKNVAGDPTKPGSGGAIASPPQNTRHGATGKVSPVAMIAIILGDILVLAIVSLLLYCYFWRNYAGKMRDGKSSQILEGEKIVYSSSPYPAQAGYERGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAHVGGKREFEQHMEVLGRLRHPNVVNLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKTLKLTHGNIKSTNILLDKCGSARVSDFGLSVFASSTAAPRSNGYRAPEILDGRKGSQKSDVYSFGVLLLELLTGKSGGSSTVGAVGGERGMDSGGV* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3522819 3525603 - Vvi1g341 Vvi1g341 769541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g341 555 PANTHER - 26 542 - -
Vvi1g341 555 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Vvi1g341 555 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Vvi1g341 555 MobiDBLite consensus disorder prediction 536 555 - -
Vvi1g341 555 Pfam Protein kinase domain 343 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g341 555 Gene3D Phosphorylase Kinase; domain 1 316 414 - -
Vvi1g341 555 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 542 - -
Vvi1g341 555 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vvi1g341 555 Gene3D Transferase(Phosphotransferase) domain 1 415 542 - -
Vvi1g341 555 SUPERFAMILY L domain-like 46 205 - -
Vvi1g341 555 ProSiteProfiles Protein kinase domain profile. 339 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g341 555 SUPERFAMILY Protein kinase-like (PK-like) 343 534 IPR011009 -
Vvi1g341 555 Gene3D Ribonuclease Inhibitor 23 85 IPR032675 -
Vvi1g341 555 Gene3D Ribonuclease Inhibitor 86 230 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76500 PF00069 Pkinase 4.60E-35 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g341 - - vvi:100267893 1027.31