Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g345 ATGGCGTCGGGAGAAGGGAGACGACATCGGAATCTTGTGCCTCTTGCTGCATTGATCAACAGAGAGATGAGGAGTGAAAAGATGGAGAAGCCGACTGTGAGATACGGGTGTGCTGCTCAGTCTAGGAAAGGAGAGGATTACTTCCTGATGAAGACAGATTGCCAGAGAATCCCTGGGAATTCTTCTTCAACCTTTTCTGTATTTGCGATCTTAGATGGACACAATGGGAATGCCGCAGCCATTTTTACGAGGGAAAATTTGTTGAATCATGTATTGGGTGCTATGCCTCGTGGGCTTGGACGGGAGGAGTGGCTTCAAGCTTTGCCTCGGGCTTTAGTTGCTGGGTTTGTAAAGACGGACAAAGAATTCCAGAGCAGAGGAGAAACTTCTGGAACCACTGCTACATTTGTAATAGTTGATGGATGGACTGTGACAGTTGCATCTGTTGGCGACTCTCGATGCATATTAGATACTCAGGGTGGTGCTGTCTCTACCTTAACTGTCGATCATAGGCTTGAAGAAAATGTGGAGGAGAGGGAACGTGTGACAGCAAGTGGAGGTGAAGTAGGAAGACTTAGCATTGTTGGTGGTGCTGAAATTGGTCCGCTCCGTTGTTGGCCAGGGGGTTTATGTCTTTCTAGGTCAATAGGAGATATGGATGTTGGAGAGTTCATAGTTCCAATACCATATGTTAAACAAGTAAAGCTATCAAATGTAGGTGGGAGACTTATAATTGCTTCTGATGGCATTTGGGATGCTCTGTGCTCAGAAATGGCTGCAAAATCTTGCCGTGGGTTGCCTGCTGAACTTGCTGCTAGGCAAGTTGTGAAGGAAGCATTGAGGACAAGGGGCCTAAAGGATGACACTACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAATACAGCCTTCAACTCCTCCAAAAAAGCAAAACAAGCTCAGAGCTCTATTATTCAGGAAGAGGTCACGTGATTCTGTGAATAAACTATCAAAGAAGCTATCAGCTATAGGTATAGTGGAAGAACTGTTTGAAGAAGGCTCAGCAATGCTTGCTGAGAGACTGGGAAGTGAGGAGTGCCCAGGGCAGCCTACATCTGGTCTTTTCATGTGTGCTGTTTGCCAAGTTGATCTTGCTCCAAGCGAGGGCATTTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCCTGGCAGGGGCCATTTCTTTGTGCTGATTGCCGTAATAAGAAGGATGCCATGGAAGGAAAACGTCCCAGTGGAATTAAAGTTGTATAA 1284 46.03 MASGEGRRHRNLVPLAALINREMRSEKMEKPTVRYGCAAQSRKGEDYFLMKTDCQRIPGNSSSTFSVFAILDGHNGNAAAIFTRENLLNHVLGAMPRGLGREEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDGWTVTVASVGDSRCILDTQGGAVSTLTVDHRLEENVEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSNVGGRLIIASDGIWDALCSEMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSIQPSTPPKKQNKLRALLFRKRSRDSVNKLSKKLSAIGIVEELFEEGSAMLAERLGSEECPGQPTSGLFMCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGIKVV* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3565118 3569339 - Vvi1g345 Vvi1g345 769545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g345 427 Gene3D - 32 301 IPR036457 -
Vvi1g345 427 SUPERFAMILY PP2C-like 25 296 IPR036457 -
Vvi1g345 427 Pfam Protein phosphatase 2C 60 281 IPR001932 -
Vvi1g345 427 ProSiteProfiles PPM-type phosphatase domain profile. 27 296 IPR001932 -
Vvi1g345 427 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 6 427 - -
Vvi1g345 427 PANTHER ALPHABET, ISOFORM E-RELATED 6 427 - -
Vvi1g345 427 SMART PP2C_4 24 294 IPR001932 -
Vvi1g345 427 SMART PP2C_SIG_2 50 296 IPR001932 -
Vvi1g345 427 CDD PP2Cc 35 296 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g345 - - vvi:100242244 840.876