Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g346 ATGACCGGACCCCATCAATCTTCTGGCGCTCACAGCATCAGGGATACCATCTGTTACGCCGCTTCGGGTGCTGCTGCAGGTGCAATTGCTGCCACTTTTGTCTGCCCATTGGATGTGATCAAAACAAGATTACAGGTCCATGGCCTACCTGAAGTTCGGCATTCTGGCGTCCGAGGTAGCGTCATTATTACAAGCCTAGAAAACATAATAAGGACAGAGGGTTTGAAGGGAATGTATCGTGGCCTTTCGCCAACAATATTGGCACTACTTCCTAATTGGGCCGTGTACTTCACAGTGTATCAGAAATTAAAAGACGTACTGCATTCCCATGTGGATAGCAGCAGTCAACTTACAATTGGTGCAAATGTGATAGCTGCTTCAGGAGCTGGGGCTGCCACAGCAATTACAACGAATCCATTGTGGGTTGTTAAGACCAGACTCCAAACACAGACAATGAGGCCAAATGTGGTTCCTTACAAAGGCATATTTTCTGCTTTGAAAAGGATTGCACAAGAGGAAGGCATTCGAGGATTGTATAGTGGCCTTTTGCCTTCATTGGCTGGAATAACTCATGTTGCCATCCAATTTCCAGCATACGAGCAGATGAAGTCCTATTTAGCTAAAATGGGTGATACCACAGTTGATGAACTAGGTCCTGGGAATTTTGCAATTGCCTCATCCTTCTCTAAAGTACTTGCCTCCGTGATGACTTATCCCCATGAGGTTATTCGTTCAAGGCTGCAAGAGCAAGGGCAGGTCCGGAATTCAGAGAAGCACTATTCAGGTGTTATTGATTGCATTGAGAAAGTGTACAGAAAGGAAGGTCTTCCTGGTTTCTATCGTGGCTGTGCAACTAATCTATTGCGGACAACTCCATCTGCTGTTATAACTTTCACCAGTTTTGAGATGATTCATAGGTTTTTACAGCGACTTCTACATCCGGATGCAAAGCATTCATCAGCCAACCCTAATTCTGATGGCCATATTAAACCTCAGCGTGAAAATGGGAGAACCGTAGTAGAACAAAATGACTCCAGTGTAAGGCAGTCACAAGCTCAATCTACTAGTAACAGAACTCCAATTCCTATTGGAAACAAGGAGCAGCTACCTGCAAGCCACTGA 1122 45.01 MTGPHQSSGAHSIRDTICYAASGAAAGAIAATFVCPLDVIKTRLQVHGLPEVRHSGVRGSVIITSLENIIRTEGLKGMYRGLSPTILALLPNWAVYFTVYQKLKDVLHSHVDSSSQLTIGANVIAASGAGAATAITTNPLWVVKTRLQTQTMRPNVVPYKGIFSALKRIAQEEGIRGLYSGLLPSLAGITHVAIQFPAYEQMKSYLAKMGDTTVDELGPGNFAIASSFSKVLASVMTYPHEVIRSRLQEQGQVRNSEKHYSGVIDCIEKVYRKEGLPGFYRGCATNLLRTTPSAVITFTSFEMIHRFLQRLLHPDAKHSSANPNSDGHIKPQRENGRTVVEQNDSSVRQSQAQSTSNRTPIPIGNKEQLPASH* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3578145 3585426 + Vvi1g346 Vvi1g346 769546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g346 373 MobiDBLite consensus disorder prediction 338 363 - -
Vvi1g346 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Vvi1g346 373 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 318 IPR044712 GO:0006862|GO:0055085
Vvi1g346 373 Pfam Mitochondrial carrier protein 116 208 IPR018108 -
Vvi1g346 373 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Vvi1g346 373 Pfam Mitochondrial carrier protein 20 109 IPR018108 -
Vvi1g346 373 MobiDBLite consensus disorder prediction 316 373 - -
Vvi1g346 373 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 11 318 - -
Vvi1g346 373 SUPERFAMILY Mitochondrial carrier 15 303 IPR023395 -
Vvi1g346 373 Gene3D Mitochondrial carrier domain 14 308 IPR023395 -
Vvi1g346 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 205 IPR018108 -
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 132 150 IPR002067 GO:0055085
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Vvi1g346 373 PRINTS Mitochondrial carrier protein signature 226 248 IPR002067 GO:0055085
Vvi1g346 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 307 IPR018108 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g346 K15115 - vvi:100264527 711.835