Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g347 ATGCTTTTGTTGTTGAATTGGGGATTTCGCATGGGTTCTGTTTCTTTTCTTGTTCTATTTCTTCTCTCTCATTCTGTGCTTCTTTCCTCTGCTGAAGAAGAAAGGAAACAGCCTCCAACTTGTCCACCCTTTCACTGTGAAAAACTGGGCTGGCTTCACTTTCCCTTCAACAACGAAACAAACCCAGAATGCGGTTTTTGCACAGTAACAAGATGTACTGAAGGGCTTCCACGGATCCAACTGGAAAGGGAAGGAAGATATTTTGGGGTGAAAAACATCTCTCAGGCTGATACCATAGTAATTCAAGATAAGCGGCTTCAAGAGAACTTGCAACGCGGCATATGTGAATTCATTGATAACTTAACTCGTTTCCGTTCTCCTTCTGTTTCTTTCAAACCAGTACCCCCTCTAGCCGAACTAACCCTGTTCAAATGCCACCGTAATCTCAATATTGATCTTACTACAGATCATAATTATACCGATTGTCAAGACTACATCATCCACTATAATCATCCAAATCATACTTCCATTCCTCCACCTCTACCTCATAATCAACCAAACCATACTCCCACTCTTCCACCTCCAGCTCCACTGGACTGTTCTATTATTCAGTATCCAATAAACATGAGTTTAGGAATGGACAACCTGGTTGCCCTGTTGACTTCTGATATCACTCTTGAAGTGCATCTGTCCCGTGAATGTCGGAAGTGTCACTCTAGTGGAGGCCAATGTCGAGATGACGAGGGAAAATTCCGGTGTGCACATACAGGGAATGACAAGCGACTGAAGCTAGCCCTAGGATTAGGTATCAGTGCCGGAAGCATTACCATCTTAATAATTTGTTTCTTTATCATCTGGCAGAGCCATAAGAGGAAGTACGCTCCAACTTTCCTCTCAAGAAACACTTGTTCAGATCCCTCTTCAAAATCAGAGTTGGAAATAACGGGGGCGTATTTTGGCATCCCCATTTTTCCCTACACTGAACTTGAAGAAGCCACTAATTATTTTGACCCTGATAGAGAAATTGGAGATGGAGGTTTTGGAACTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCTGTCAAGCGCCTATACGAGAACAATCACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTGCGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGCACAGTCGCTGATCATCTCCACGGGGATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCACTGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAAGAACATTCTCCTGGACGATAGTTTCTGTGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCGACCGATGTTACCCATGTCTCAACCGCTCCACAAGGGACTCCCGGCTATGTTGATCCAGAATATCACCAATGTTACCAGCTTACAGATAAGAGCGATGTTTACAGCTTTGGGGTTGTCCTTATTGAGCTCATATCATCACTGCCTGCTGTAGACATTAATAGGCATAGGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGCGCATTTCACGAGCTGATAGACCCACGTCTTGGATTTGATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTGGCAGAATTGGCCTTTCGCTGTCTGCAACCTGATAAGGAAATGAGGCCTTCCATGGATGAAGTCTTGGAGATTTTGAAGGAAATTGAGAGTGACAAGCATGAATCGGAGAACATGGACATAGCAACCGACAGTGTTGGATCGTCGATGCATGAGCCACCGCTTCCACCTTCACCAGATTGTGATGAAGTGGGGTTGTTGAAAAGTGTCCAGCTGATGCCATCACTAGATACTGTGACCGCTCAATGGCCCAGTAGGTCTACTACACCAAGCGCCACAGATACAGAAGAGAAAACATGGCTTAAAGGGAGAGGAAGATTACCCTGTTGCCGTCGGTTTGGTGCCATGCTTTTGTTGTTGAATTGGGGATTTCGCATGGGATCTGTTTCTTTTCTTGTTCTAGTTATTCTCTCTCATTCTGTGCTTCTTTCTTCTTCAGGAAAAGAAGGGAAACACCCTCCAAATTGTTCATTCTTCCAATGTGGAAAACTGGGCTGGCTTAAATTTCCCTTCAACAATGAAACAAATCCAGAATGCGGATTGCGTACAATAGTAAATTGCACTGAAGAGGCTCCGAAGATCCAACTGGAAAGGGGAGGAAGACATTTTGAGGTGAAAAACATCCAGGGTGATACCATAATAATTCAAGATGAGCAGCTTCAAGAGCACTTGAAACATGGCAGATGTGACTTCATCGACAACTTAACTTCTTCCCCTTCTCCTTCTGTTTTTTTCACACCAGTACCCACCCTAACCGAACTAACCCTGTTTAAATGCCACCGTAGTCACAATATTGATCTTATTACAGAGTATAATTATACCAGATGTCAAGACTACATTATCCACTATAATCATTCAAATCATATTCCTCCAACTCCACCTCCACCTGGCTGTTCAATTATTCAGTATCCAGTAAACATGAGTACTGTAGGTATCGCTAAACTGGATTCCCTGTTGACTCCTGATATCACTCTTGAAGTGAATGTGTTCTCACACTGTTGGAATTGTCTCAATAGAGGAGGCCAATGCCAAGATGATGAAAAGGGAAAATTCCAGTGTGCACATGTGAAAGGGAATGACAATCGATTGAAGCTAGCCCTAGGATCAGGTATCAGCGCCGGAGGCATTACCATCTTAATAATTTGTTTCATCATCCGACAGCGCCATAAAAGGAAGTATGCTTCAACTTTCCTCTCAAGGAACACTTCTTCAGATCCCTCTTCACAACCAGGATTGGAAACAACGGGGACGTATTTTGGCATCCCCATTTTCCCCTACAGTGAACTTGAAGAAGCCACTTATCATTTTGTCCCTGATAGAGAAATTGGAGATGGAGGTTTTGGAACTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCCGTCAAGCGCCTATACGAGAACAATTACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTGCGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGAACAGTCGCTGATCATCTCCACGGGAATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCAGCGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAAGAACATTCTCCTGGATAATAGTTTCTGCGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCCACTGATGTTACCCATGTCTCAACCGCTCCACAGGGAACTCCCGGCTATGTTGATCCAGAATATCACCTATGTCACCAGCTTACCGACAAGAGCGATGTTTACAGCTTCGGGGTTGTCCTTATTGAACTCATATCATCACTGCCTGCTGTAGACTTTAGTAGGCTTAAGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGTGCATTTCACGAGCTGATTGACCCACATCTTGGATTCAATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTAGCAGAATTAGCCTTTCGCTGTCTGCAACCTGACAAGGAAATGAGGCCTTCCATGGATGAAGTTTTGGAGATTTTGAAGGAAATTGAGAGTAACAGGCATGAATTGGAGAACATGGACGCAGCAGCGGACAGTGTTGGATCATCGATGCGTGAGCCGCCGCCACCTTCACCAGATTGTGATGAAGTGGGGTTGTTGAAAAGCGTCCAGCTGATGCCATCACCAGATAGTACGACCGCTCAATGGGCCAGTAGGTCTACTACACCAAGCGCCATTCCGTTATGTCTCAACAGGGAAGCATTGATTAGCTCTTAA 4107 44.58 MLLLLNWGFRMGSVSFLVLFLLSHSVLLSSAEEERKQPPTCPPFHCEKLGWLHFPFNNETNPECGFCTVTRCTEGLPRIQLEREGRYFGVKNISQADTIVIQDKRLQENLQRGICEFIDNLTRFRSPSVSFKPVPPLAELTLFKCHRNLNIDLTTDHNYTDCQDYIIHYNHPNHTSIPPPLPHNQPNHTPTLPPPAPLDCSIIQYPINMSLGMDNLVALLTSDITLEVHLSRECRKCHSSGGQCRDDEGKFRCAHTGNDKRLKLALGLGISAGSITILIICFFIIWQSHKRKYAPTFLSRNTCSDPSSKSELEITGAYFGIPIFPYTELEEATNYFDPDREIGDGGFGTVYHGQLRDGREVAVKRLYENNHRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGDRADSGLLTWPIRLSIAIETATALCYLHASDVVHRDVKTKNILLDDSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSLPAVDINRHRHEINLSNYAINKIQKCAFHELIDPRLGFDSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESDKHESENMDIATDSVGSSMHEPPLPPSPDCDEVGLLKSVQLMPSLDTVTAQWPSRSTTPSATDTEEKTWLKGRGRLPCCRRFGAMLLLLNWGFRMGSVSFLVLVILSHSVLLSSSGKEGKHPPNCSFFQCGKLGWLKFPFNNETNPECGLRTIVNCTEEAPKIQLERGGRHFEVKNIQGDTIIIQDEQLQEHLKHGRCDFIDNLTSSPSPSVFFTPVPTLTELTLFKCHRSHNIDLITEYNYTRCQDYIIHYNHSNHIPPTPPPPGCSIIQYPVNMSTVGIAKLDSLLTPDITLEVNVFSHCWNCLNRGGQCQDDEKGKFQCAHVKGNDNRLKLALGSGISAGGITILIICFIIRQRHKRKYASTFLSRNTSSDPSSQPGLETTGTYFGIPIFPYSELEEATYHFVPDREIGDGGFGTVYHGQLRDGREVAVKRLYENNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGNRADSGLLTWPIRLSIAIETASALCYLHASDVVHRDVKTKNILLDNSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHLCHQLTDKSDVYSFGVVLIELISSLPAVDFSRLKHEINLSNYAINKIQKCAFHELIDPHLGFNSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESNRHELENMDAAADSVGSSMREPPPPSPDCDEVGLLKSVQLMPSPDSTTAQWASRSTTPSAIPLCLNREALISS* 1369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3595151 3609449 - Vvi1g347 Vvi1g347 769547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g347 1368 CDD STKc_IRAK 342 611 - -
Vvi1g347 1368 Coils Coil 601 621 - -
Vvi1g347 1368 ProSiteProfiles Protein kinase domain profile. 1018 1301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g347 1368 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 665 - -
Vvi1g347 1368 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 717 1348 - -
Vvi1g347 1368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1138 1150 IPR008271 GO:0004672|GO:0006468
Vvi1g347 1368 Gene3D Transferase(Phosphotransferase) domain 1 413 625 - -
Vvi1g347 1368 Gene3D Transferase(Phosphotransferase) domain 1 1095 1307 - -
Vvi1g347 1368 Coils Coil 1283 1303 - -
Vvi1g347 1368 Pfam Protein tyrosine and serine/threonine kinase 339 607 IPR001245 GO:0004672|GO:0006468
Vvi1g347 1368 Pfam Protein tyrosine and serine/threonine kinase 1021 1289 IPR001245 GO:0004672|GO:0006468
Vvi1g347 1368 SUPERFAMILY Protein kinase-like (PK-like) 994 1290 IPR011009 -
Vvi1g347 1368 SMART serkin_6 336 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g347 1368 SMART serkin_6 1018 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g347 1368 SUPERFAMILY Protein kinase-like (PK-like) 311 608 IPR011009 -
Vvi1g347 1368 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 20 665 IPR044652 -
Vvi1g347 1368 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 717 1348 IPR044652 -
Vvi1g347 1368 ProSitePatterns Protein kinases ATP-binding region signature. 1024 1046 IPR017441 GO:0005524
Vvi1g347 1368 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vvi1g347 1368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vvi1g347 1368 Gene3D Phosphorylase Kinase; domain 1 995 1094 - -
Vvi1g347 1368 Gene3D Phosphorylase Kinase; domain 1 309 412 - -
Vvi1g347 1368 ProSiteProfiles Protein kinase domain profile. 336 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g347 - - - vvi:100259351 1345.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g347 Vvi17g289 ECH
Vvi1g347 Vvi14g858 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g347 . . . . . . . . . Cmo18g01013 . Cma18g01002 . Car18g00924 . . . Bhi07g01296 . . . . . . Cla05g02281 . . . . . . . . . . Lsi04g00234 Csa05g02634 . Cme10g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76502 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Vvi PK