Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g348 ATGAGACTTATCCAACCAAATAAATGTCATAAAGGCAACCCATATTCCACTCTTCAGACTCTCTTTTCAAGCCTGCAAGACCCTATCTGTGGCTACCTTGGGTTCAACGTTTCCTGCCTCCATAACACTACAATTCTCACCATATCCGAGAACCCTTACATCATCCACCAAATTTTCTACCAAAACCAGACTCTTCGAGTCTCAAACGCCTTAGGAAATGGCTGCCTTCCTTTGGGTCGCGACCTACTCCTTCCCAATGAAGAATTTGAGCTCGCTCATCCTGATGGCACCGACTTCTTCTTCTTTCTATCCAATTGTTCAGCTCCATTGCCTGATAATCTAGTACGCTACAAGATTAATTGTTCTGGCGATGATGGAGCAAGTCCGGTTCTGGCAATGTCTAAGGGAGATTCAAACTGGGTTCTGGCGTCCGAGAAGTGCGGAAGAGAGGTAAAAGCGCCTTTTGAAGAGAAGGCAGATGATGGGAGTAATGAAATTGGGGAGGAATTGGTGAGAAGAGGGTTCATGCTGAAATGGAGAGCAAGCGACTGTAGCGTGTGCGAGGAGAGTGGTGGCAAGTGTGGGTTTAATATCAGTGATTACCATTTCAAGTGTTTCTGCCCCGACCGTCCTCACGCTAAGCATTGCGTATCCATATCCAGAAATGACAAGACACTGAAGCTAGCCCTAGGATTAGGTATTGTCGGAAGCATTCCCTTCTTAATAATTTGTTTCTTTATCATCCGGCAGCGCCGTAAAGGGAAGTATGCTTCAACTTTCCTCTCAAGGAACACTTCTTCAGATCCCTCTTCACAACCAGGGTTGGAAACAGCGGGGGCGTATTTTGGCATCGCCATATTCCCCTACACTGAACTTGAAGAAGCCACTAATTATTTTGACCCTGACAGAGAAATTGGAGATGGAGGCTTTGGAAGTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCTGTCAAGCGCCTATACGAGAACAATTACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTACGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGCACAGTCGCTGATCATCTCCACGGGGATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCACCGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAGCAACATTCTCCTAGACAATAGTTTCTGTGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCCACCGATGTTACCCATGTCTCAACCGCTCCACAAGGGACTCCCGGCTATGTTGATCCAGAATATCACCAATGTTACCAGCTTACAGATAAGAGCGATGTTTACAGCTTTGGGGTTGTCCTTATTGAACTCATATCATCACTGCCTGCTGTAGACATTAGTAGGCACAGGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGCGCATTTCACGAGCTGATGGACCCGCATCTTGGATTTGATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTGGCAGAATTGGCCTTTCGCTGTCTGCAACCTGATAAGGAAATGAGGCCTTCCATGGATGAAGTCTTGGAGATTTTGAAGGAAATTGAGAGTGACAAGCATGAATTGGAGAACATGGACACAGCAGCGGACAGTTATGTCTACTACACCAAGCGCCAGTGCTTAACGTTTCCCTTGTATTTTGCTTATTTTCCGATGGAGATGCTAACAATATGTGAAACATGTCTGAGGGGAATATACCAAGTTAAAGAAGCTGCCATTGCTATGCCCAGTTTTGATTTTGCTAGTTTTGGTCTGTCTTGTGATTGTGATTACAATACGGAATCATCCATCTAG 1971 45.51 MRLIQPNKCHKGNPYSTLQTLFSSLQDPICGYLGFNVSCLHNTTILTISENPYIIHQIFYQNQTLRVSNALGNGCLPLGRDLLLPNEEFELAHPDGTDFFFFLSNCSAPLPDNLVRYKINCSGDDGASPVLAMSKGDSNWVLASEKCGREVKAPFEEKADDGSNEIGEELVRRGFMLKWRASDCSVCEESGGKCGFNISDYHFKCFCPDRPHAKHCVSISRNDKTLKLALGLGIVGSIPFLIICFFIIRQRRKGKYASTFLSRNTSSDPSSQPGLETAGAYFGIAIFPYTELEEATNYFDPDREIGDGGFGSVYHGQLRDGREVAVKRLYENNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGDRADSGLLTWPIRLSIAIETATALCYLHASDVVHRDVKTSNILLDNSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSLPAVDISRHRHEINLSNYAINKIQKCAFHELMDPHLGFDSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESDKHELENMDTAADSYVYYTKRQCLTFPLYFAYFPMEMLTICETCLRGIYQVKEAAIAMPSFDFASFGLSCDCDYNTESSI* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3628670 3638222 - Vvi1g348 Vvi1g348 769548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g348 656 Gene3D Phosphorylase Kinase; domain 1 276 375 - -
Vvi1g348 656 ProSiteProfiles Protein kinase domain profile. 299 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g348 656 Pfam Protein kinase domain 302 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g348 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 585 IPR044652 -
Vvi1g348 656 Pfam Wall-associated receptor kinase C-terminal 135 209 IPR032872 -
Vvi1g348 656 Coils Coil 564 584 - -
Vvi1g348 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Vvi1g348 656 SMART serkin_6 299 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g348 656 Pfam Wall-associated receptor kinase galacturonan-binding 26 68 IPR025287 GO:0030247
Vvi1g348 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 585 - -
Vvi1g348 656 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Vvi1g348 656 SUPERFAMILY Protein kinase-like (PK-like) 279 571 IPR011009 -
Vvi1g348 656 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g348 Vvi17g288 ECH
Vvi1g348 Vvi14g858 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76503 PF07714 PK_Tyr_Ser-Thr 1.60E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g348 - - vvi:100266298 1154.43