Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g35 ATGCCTTCCATCACTATTTGTCCACACAACCCTCACTTCCCCAACATTTTCCATTTCATTTTCTTCCTCCATTTTCGCACATTCTCAATAACCAATTTAAAAATCAATTCAAAAGCTAAATTTAAAACCAAAATTCTTGCGATCTTTTTGAGCCAATCCACGTTTCAATTTTATCAGATTGGGGCGGGGAAAAAGGGGGAGCTGGGAATCGCCGGTGCCGCTTCCGGCAGGTGGATTTTAGCGGCTGGAATTGGGGCCTCTTTCGGGGATAGAAGGCCTGGTCTGGGATTCAGCCTGGATTCCATCAATATCTTCAGCTATGATAAGGATGCGCAACTAGAACTAAAAGATGAAAATGATACAGGGTTTCCTGGTCCTGCATCACCATCACAGGTTTCTGATCTCAGACAAGAGACTTCATTTCACTGCATGTCACCCACGCAATCCCCCCCAGTCCAATCGATGGAAAGGTCAGGAGATGATGAACCGTATAGGATTCCATCTTCTGTGTTTGCCAGAAGTCAATCAACAACTCCATTGGAATGGAGTGTTGCTTCCAACGAGTCACTGTTCAGCATCCATGTAGGGAACAGTAGTTTCTCCAGAGAGCATATTTTCATGTTGGGTGGAGATCATACCAAGTCTGGAGAACTAACCAAGTCTGGAGAGTTGATTGTGTTCAGCTCGTCTCCACCAGCTCGGTTAGGGGATAATGTCAGTAAGATGCCACCAACTTCAGCTGATCAAAATGTTGAAAAGATAGCTCGACCAGAGGTGCCTTTTAATTCTAGCAGCGTGCGCCGTTCTGATGCGAGTGCAACCAGCTCACGCTCTTTTGCATTTCCAATTTTGACAGAAGAGGAAAGAAATGTTTCAATCAAGGAGCAACCTGAGAAACAGCTTTCACAGAAGCAACTGCAACCGAGAGCCACTGAAGCGACTTCAAGTGATGCTGCTAGCAGCATTTGGTTGAGTTGTGCTTGTTGTCCATACAAATGCTGTTGA 1005 45.17 MPSITICPHNPHFPNIFHFIFFLHFRTFSITNLKINSKAKFKTKILAIFLSQSTFQFYQIGAGKKGELGIAGAASGRWILAAGIGASFGDRRPGLGFSLDSINIFSYDKDAQLELKDENDTGFPGPASPSQVSDLRQETSFHCMSPTQSPPVQSMERSGDDEPYRIPSSVFARSQSTTPLEWSVASNESLFSIHVGNSSFSREHIFMLGGDHTKSGELTKSGELIVFSSSPPARLGDNVSKMPPTSADQNVEKIARPEVPFNSSSVRRSDASATSSRSFAFPILTEEERNVSIKEQPEKQLSQKQLQPRATEATSSDAASSIWLSCACCPYKCC* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 448023 451702 - Vvi1g35 Vvi1g35 769235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g35 334 MobiDBLite consensus disorder prediction 116 162 - -
Vvi1g35 334 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 106 333 - -
Vvi1g35 334 MobiDBLite consensus disorder prediction 296 314 - -
Vvi1g35 334 MobiDBLite consensus disorder prediction 124 155 - -
Vvi1g35 334 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 106 333 - -
Vvi1g35 334 MobiDBLite consensus disorder prediction 290 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g35 - - - vri:117912537 404.445
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g35 Vvi17g666 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31