Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g350 ATGGCGTCAGACATTTCAACGATTTTTCCGAGGGTTCTTATCGTCTCTCGACGGACCGTTCGCAAGAACAAGTTTGTAGATTTTGTGGGAGAATATCATCTTGATCTTATAGTAAACTATGGAGCAGTACCTGTAATCGTCCCAAGAGTTAGTGGAGTCCACATGCTGCTAGAAAGCTTCGAGCCAATCCATGGCGTTCTCCTATGCGAGGGTGAAGACATTGATCCATCCCTTTACGACGCAGAGCTTTCTGGCTTTTCCCCAGAAGAAATTGAAGAGATCAGGCGGTTGCATGCCAGTGACATAGCCATTGATCGAGAGAAAGATTCAATTGAGTTACTCCTTGCTAAGCTTTGCCTGGAAAGGAGCATACCCTTCTTAGGCATCTGCAGGGGATCGCAGGTCCTTAACGTTGCATGTGGAGGTAGCCTTTATCAGGACGTAGAGAGAGAACTCTCAAAGAAGTGCCCAGAAGGGCAGAGAGTGGTTCATATGAACTACGAAAATTATGATGGGCATCGGCACATAGTGAAGGTGGTGGAGAACACCCCTTTGCATCACTGGTTTAAAGATTCTTTGGAGGCTAACAAAATGGATATATGGGTAAATAGTTATCATCATCAGGGCGTTAAAAGATTAGCTCAGAGATTCGTCCCAATGGCCTTCGCTCCTGATGGCTTGGTTGAAGGATTCTATGATCCCCACGTTTATAATCCCGAAGAGGGTAACTTTATCATGGGTCTGCAGTTTCATCCTGAGCGGATGCGACAACCGAATTCTGATGATTTTGATTATCCAGGATGCCCCTCTGCATATCAGGAATTTGTCAAGGCAGTGAAAGCTTACCAAAAGAAGCTCAATGGTTCAGCATTTGTGGCCAAGACTCTAAAGCTTGACGAAGATGTGGAGAAGAAGAGAAAGGTGATTGGTCGAAGTTTCTCAATTGCAAGAGACATGTACAGCACCCGCAGAGGAATGCTTGGGGAAGAGGAATCTGAACTCGAAGTTGGAGCAAAGTTTCTGGAGGCAAATACAGCATTGAGTTTGCAGCAGGAGAAGAGGTTGAAGCAGATGGGTGCAACAGTGAGAAATGCTTCAGTGTACATGGAAAGGTTGAAGATGAATGAGGAAAAGGAAAAACTTGCAAGGACAATGATGGGGAAGATGTCCATTGAACAGTTATCCGAAATTGTGTCCTTCTACCACATGATGGGGCGAATTTGTTCAGAGGTTTTAGAGAGAAAACTTCACAACTTGACGAATGAAATTGGTGGCTGA 1278 44.84 MASDISTIFPRVLIVSRRTVRKNKFVDFVGEYHLDLIVNYGAVPVIVPRVSGVHMLLESFEPIHGVLLCEGEDIDPSLYDAELSGFSPEEIEEIRRLHASDIAIDREKDSIELLLAKLCLERSIPFLGICRGSQVLNVACGGSLYQDVERELSKKCPEGQRVVHMNYENYDGHRHIVKVVENTPLHHWFKDSLEANKMDIWVNSYHHQGVKRLAQRFVPMAFAPDGLVEGFYDPHVYNPEEGNFIMGLQFHPERMRQPNSDDFDYPGCPSAYQEFVKAVKAYQKKLNGSAFVAKTLKLDEDVEKKRKVIGRSFSIARDMYSTRRGMLGEEESELEVGAKFLEANTALSLQQEKRLKQMGATVRNASVYMERLKMNEEKEKLARTMMGKMSIEQLSEIVSFYHMMGRICSEVLERKLHNLTNEIGG* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3668619 3670737 - Vvi1g350 Vvi1g350 769550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g350 425 CDD GATase1_2 12 262 - -
Vvi1g350 425 Pfam Peptidase C26 27 253 IPR011697 GO:0016787
Vvi1g350 425 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 22 285 - -
Vvi1g350 425 Gene3D - 9 290 IPR029062 -
Vvi1g350 425 PANTHER CLASS I GLUTAMINE AMIDOTRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 423 - -
Vvi1g350 425 SUPERFAMILY Class I glutamine amidotransferase-like 29 282 IPR029062 -
Vvi1g350 425 PANTHER GLUTAMINE AMIDOTRANSFERASE PB2B2.05-RELATED 1 423 IPR044668 GO:0016811
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g350 - - - vvi:100250861 855.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g350 Vvi14g857 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005853 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 2 2 39