Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g354 ATGGTTCCTTTGGTTTTGTTGGTGCTTCTTCTCTGCAACTCCCATGCTCTTGTGGGTTCTCTGAATGAGGAAGGCGTTGCACTTTTGTCGTTTAAGCGGTCCGTTGGAGAAGACCCAGAAAGGTCTTTGGATAACTGGAACTCTTCTGACGAGAACCCTTGTTCATGGAATGGTATTACATGCAAAGAGGAAAGAGTTGTGTCTGTTAGCATTCCGAAGAAGAAACTCCTTGGGTTTCTTCCTTCTGCTCTTGGATCTCTAACTCAACTCAGACATGTGAATTTGAGGAACAATAAGTTCTTTGGGAGCTTGCCTGTTGAGCTCTTTAAAGCACAAGGGCTACAAAGTCTGGTCCTTTATGGAAATAACTTGTCTGGGTCAGTGCCTTCTGAAATTGGGAGTCTCAAATACCTTCAGACCTTAGATTTATCGCAGAATTTTTTCAATGGGTCGTTACCCACGTCTCTGCTGCAGTGCAAGAGATTGAAAACTCTTGATCTCAGCCAAAACAATTTCACTGGTTCTCTGCCAGATGGGTTTGGGAAGGGGTTGATTTCTCTGGAAAAGCTCGATCTTTCTTTCAACAAATTCAGTGGTCCTATTCCTAGCGACATTGGAAATTTGTCTAATTTGCAAGGGACCGTTGATTTATCTCATAATATCTTCAGTGGTTCAATTCCAGCCAGCCTCGGGGACCTTCCTGAGAAGGTTTATATTGATCTCACTTATAACAATTTGAGCGGTCCAATACCCCAAAATGGTGCTCTAATGAACAGAGGACCAACAGCTTTTATCGGGAATCCTCGGCTCTGTGGCCCTCCTTCGAAGAATCCATGTTCTCCTGAAACAGCCAGTTCACCTTCCTCAATTCCTTTTTTGCCTAATAACTACCCGCCTCCGAATTCAGATGGTGATTCAGGGAAGGGGAAAGGAAGGGGTCTCAGTAAGAGTGCTGTAATTGGAATTGTAGTGGGCGATGTGGTAGGAATCTGCCTTATTGGGTTGCTTTTCTCTTATTGTTATTCGAGGATGTGTTCTTGTGGCAAGGGTAAGGATGAGAATGGTTATGGTTTTGAGAAGGGAGGGAAGGCCAGGAAGGAGTGTTTGTGCTTCAGGAAAGATGAGTCTGAAACCCTATCAGAAAATGTGGAGCAGTATGATCTTGTGCCGCTGGATACACAAGTGGCTTTTGACCTGGACGAGCTTCTGAAGGCATCTGCTTTTGTCTTAGGGAAGAGTGGAATTGGGATTGTGTACAAAGTTGTGCTTGAAGATGGAAGCACCTTAGCTGTGAGAAGATTAGGGGAAGGAGGTTCTCAGAGGTTTAAAGAATTTCAGACGGAAGTAGAAGCTATAGGAAAACTAAGGCATCCTAATATTGTCACTCTTAGAGCTTATTACTGGTCTGTCGATGAGAAGCTGCTCATCTATGATTACATACCAAACGGAAACCTTGCCACTGCAATTCATGGGAAGCCTGGAATGGTATCCTTTAGGCCTCTACCATGGTCTGTCCGGTTGAAAATCATGGAAGGAACTGCTAAAGGCTTGGTTTATCTGCATGAATTTAGTCCCAAAAAATATGTCCATGGAGATTTGAAGCCTAGTAATATACTGCTTGGGCAGAACATGGAACCCCACATCTCTGATTTTGGACTTGGGCGGCTAGCTAATATTGCTGGCGGATCCCCAACCCTGCAATCTAGTAGAATGACTTCTGAGAAACCCCCACAAAGACAACAAAGTAATCCACCCTCAGAAGTTGGTGCAGTTAGTTCAACTTCAAACTTGGGGTCCTATTATCAAGCTCCAGAGGCACTGAAAGTGGTGAAGCCCTCACAAAAGTGGGATGTTTACTCATATGGGGTGATTTTACTGGAAATGATTACTGGAAGATTGCCGGTAGTCCAAGTGGGTAGCTCAGAGATGGATCTGGTTCGCTGGATTCAGCTGTGCATTGAAGAGAAGAAGCCACTTGCGGATGTCCTAGACCCATATCTAGCTCAAGATGCAGACAAGGAAGAAGAGATGGTTGCAGTTCTAAAGATCGCAATGGCTTGTGTTCACAGCAGCCCTGAAAGGAGGCCAGCAATGAGACACGTCTCCGATATCTTGGACAGATTGGCCATGTCAACTGATTGA 2142 44.68 MVPLVLLVLLLCNSHALVGSLNEEGVALLSFKRSVGEDPERSLDNWNSSDENPCSWNGITCKEERVVSVSIPKKKLLGFLPSALGSLTQLRHVNLRNNKFFGSLPVELFKAQGLQSLVLYGNNLSGSVPSEIGSLKYLQTLDLSQNFFNGSLPTSLLQCKRLKTLDLSQNNFTGSLPDGFGKGLISLEKLDLSFNKFSGPIPSDIGNLSNLQGTVDLSHNIFSGSIPASLGDLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPRLCGPPSKNPCSPETASSPSSIPFLPNNYPPPNSDGDSGKGKGRGLSKSAVIGIVVGDVVGICLIGLLFSYCYSRMCSCGKGKDENGYGFEKGGKARKECLCFRKDESETLSENVEQYDLVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGSTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGNLATAIHGKPGMVSFRPLPWSVRLKIMEGTAKGLVYLHEFSPKKYVHGDLKPSNILLGQNMEPHISDFGLGRLANIAGGSPTLQSSRMTSEKPPQRQQSNPPSEVGAVSSTSNLGSYYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPVVQVGSSEMDLVRWIQLCIEEKKPLADVLDPYLAQDADKEEEMVAVLKIAMACVHSSPERRPAMRHVSDILDRLAMSTD* 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3716033 3718950 + Vvi1g354 Vvi1g354 769554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g354 713 SUPERFAMILY Protein kinase-like (PK-like) 409 704 IPR011009 -
Vvi1g354 713 MobiDBLite consensus disorder prediction 564 593 - -
Vvi1g354 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vvi1g354 713 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Vvi1g354 713 SUPERFAMILY L domain-like 23 274 - -
Vvi1g354 713 CDD STKc_IRAK 410 708 - -
Vvi1g354 713 Gene3D Transferase(Phosphotransferase) domain 1 480 713 - -
Vvi1g354 713 MobiDBLite consensus disorder prediction 274 310 - -
Vvi1g354 713 ProSiteProfiles Protein kinase domain profile. 404 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g354 713 SMART serkin_6 409 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g354 713 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vvi1g354 713 SMART LRR_typ_2 160 182 IPR003591 -
Vvi1g354 713 SMART LRR_typ_2 135 159 IPR003591 -
Vvi1g354 713 SMART LRR_typ_2 87 111 IPR003591 -
Vvi1g354 713 SMART LRR_typ_2 184 208 IPR003591 -
Vvi1g354 713 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 4 712 - -
Vvi1g354 713 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Vvi1g354 713 Pfam Leucine rich repeat 89 146 IPR001611 GO:0005515
Vvi1g354 713 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 712 - -
Vvi1g354 713 Pfam Protein kinase domain 410 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g354 713 Gene3D Ribonuclease Inhibitor 76 283 IPR032675 -
Vvi1g354 713 Gene3D Ribonuclease Inhibitor 15 75 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76504 PF00069 Pkinase 2.00E-32 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g354 - - vvi:100262836 1389.79