Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g356 ATGTCTCCACGTGTAGTGGTGGTGGTTCCTGACCTATGCTGTACTCCTGGGATTGGTTTAGCGGCCTCCAATGCTGCTTTGGTTGATTTTGTAGAACCAACAAGGTCCCTTTCTTCAAGAGGGAGGGTCAATGCTCACAGAACCAATAACAGAGAGCGTGGTCGGACAAGAAGGAGAGGCAGCGACCATGATCAGGCTTCTGGATCACATATCTCTAATGCTAGAAGATATGATGATTTTGGGCATGGCTCTTCTGGAGGTCTCTCTCGCTCAGAGATGATGATACTACAGAGTAGCCTACTGTTTGGAGAGAATGTGGAGGGATCTGATCGATATGGGGACTGGAGACTTGATGTTGACCACATGTCGTATGAGGAACTACTGGATTTGGGTGACAGAATTGGGTATGTAGGCACAGGCCTGAGAGAAGATGAGATATTCCGGTGCCTGAGGAACATGAAGCACCCGATTTTGGATTCCCTCCCCTTACTATCCTCCACCGGTGACAACTGGAGGTGCAGCATTTGTCAAGAGGAATACGAAGCTGATGATGAGGTGGGAAGGCTGGATTGTGGCCACTGCTATCACATACATTGTATTAGACAGTGGCTCCTGCGGAAAAATGCTTGTGCTGTTTGCAAAGCTGCGGCTGCGGCTTACAACTGA 666 48.95 MSPRVVVVVPDLCCTPGIGLAASNAALVDFVEPTRSLSSRGRVNAHRTNNRERGRTRRRGSDHDQASGSHISNARRYDDFGHGSSGGLSRSEMMILQSSLLFGENVEGSDRYGDWRLDVDHMSYEELLDLGDRIGYVGTGLREDEIFRCLRNMKHPILDSLPLLSSTGDNWRCSICQEEYEADDEVGRLDCGHCYHIHCIRQWLLRKNACAVCKAAAAAYN* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3727772 3730367 + Vvi1g356 Vvi1g356 769556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g356 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 9 218 IPR045191 GO:0061630
Vvi1g356 221 SMART ring_2 173 213 IPR001841 -
Vvi1g356 221 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 218 - -
Vvi1g356 221 MobiDBLite consensus disorder prediction 45 65 - -
Vvi1g356 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 220 IPR013083 -
Vvi1g356 221 SUPERFAMILY RING/U-box 167 216 - -
Vvi1g356 221 Pfam Ring finger domain 173 214 IPR001841 -
Vvi1g356 221 MobiDBLite consensus disorder prediction 38 78 - -
Vvi1g356 221 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g356 - - - vvi:100252628 420.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g356 Vvi17g278 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004518 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42