Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g358 ATGTCTGTTGATGGGATTGGAGTGGAGAGAGTGTTTATAGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGGCAGCTCAGATTTTGACTACACTTCCAGGTCACAAGGCTTCTGTCAACTGCACCCATTGGATTCCAAGTTCTAAATTTGCGTTCAAAGAAAAACAGCTAGAGCGGCATTATCTGTTATCTGGTGATGCAGATGGTGTTATTCTGTTATGGGAATTATCTCTTGCAGACAAAAAGTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCTCTTCAGATGGAACAATAAATGTGTGGGAACTGATCCTTCCATCCACTATTGGAGGTGACTGCAAATTGTCATTTCTGGAATCTATTTTTGTTGGTTCAAAATCCATGGTGGCACTTTCATTATCAGAATTACCTGGAAATACTGGGCATGTAGTCCTGGCAGCTGGGGGCTTAGATAATAAAGTTCATCTTTATTGCGGGGAGAGGACAGGAAAGTTTGTTCATGCTTGTGAGTTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCCTTGCCTATATGCACCAATGATGGAACAAGCAGTCTTTTACTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTTCATGTAGTTCTCAATCCAATTCTAAGGGTACATTTAGGGAGGAAAAGATAAGCTTGGCATCTTATATTGAAGGTCCTGTACTTGTTGCTGGCTCATCCTCGTATCAGATATCTCTGGAATCTCTTCTTATTGGACACGAGGATTGGGTTTATTCAGTGGAGTGGCAACCCCCTTCAGTCACATCTGCAAATGGGTTTGCCTACTATCAACCACAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATCTGGCAACCTGAAAGGACTACTGGTATCTGGATGAATGTGGTCACTGTTGGGGAATTAAGTCATTGTGCTTTAGGGTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTGGCTCATGGTTACGGTGGATCTTTCCATCTCTGGAAAAATGTTGGTATCGAATATGACAATTGGCAACCACAAAAAGTTCCCTCTGGGCACTATGCAGCAGTGACTGATATTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCGATTGTTGGCATGAAATTGCTCGCCCTCAAGTTCATGGTCATGACATTAACTGTGTGACAATCATCCATGGAAAAGGGAACCATCGGTTTGTTAGTGGAGCTGATGAGAAGGTTGCCAGAGTGTTTGAGGCTCCTCTGTCTTTTCTAAAGACATTAAATCATGCCATTTCACAAAAATCTAGTTTTCCTGAAGACTTTCAAGTCGATGTTCAGATTTTGGGTGCAAATATGTCAGCTTTGGGACTATCACAGAAACCTATTTATGTTCATTCCACACATGAGAGTCCAGAAAGAAATGTCAATGATGGCCTTGACACACTTGAAACCATTCCAGATGCAGTACCAGTTGTGTTAACTGAACCCCCCATTGAAGAAAAATTGGCATGGCATACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGGAAGGCAGTTGGTCGCTTGCAATCTCACAGCTTAACAGTGACACAGATTGAATTTTCTCATGATGACAATCTGCTTTTGTCTGTCTCCAGGGATCGCCAGTTTTCTGTTTTTGCAATAAAAAGAACAGGTGTGGACGAAGTCAGTCACCAGCTTATAGCAAGGCAGGAGGCACACAAAAGAATAATATGGGCATGCTCTTGGAACCCATTTGGTCATGAATTTGCAACAGGTTCAAGGGACAAAACTGTGAAGATCTGGGCTGTAGACAAGGGATCTTCAGTTAAGCAGCTCATGACTTTGCCACAGTTCACCAGTAGTGTCACCGCCTTATCTTGGTTTGCTCTTGATCATCAGAGAAACGATGGGTTTCTTGCTGTTGGAATGGAAAGTGGACTCGTTGAATTGTGGAGCCTTTCGGTGACCAGAACCGTAGATGATTGCAAAAGCGTACTGCTTGCTTCTTGTGGAGCTGATCATTGTGTGAGAATTTTTGAGGTCAATGTTGCGTAA 2406 43.31 MSVDGIGVERVFIGAGCNRIVNNVSWGACDLVAFGAENGVAIFCPKAAQILTTLPGHKASVNCTHWIPSSKFAFKEKQLERHYLLSGDADGVILLWELSLADKKWRHVLQVPQPHKKGVTCITGIMVSETDVIFASTSSDGTINVWELILPSTIGGDCKLSFLESIFVGSKSMVALSLSELPGNTGHVVLAAGGLDNKVHLYCGERTGKFVHACELKGHTDWIRSLDFSLPICTNDGTSSLLLVSSSQDRGIRIWKMASCSSQSNSKGTFREEKISLASYIEGPVLVAGSSSYQISLESLLIGHEDWVYSVEWQPPSVTSANGFAYYQPQSILSASMDKTMMIWQPERTTGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIEYDNWQPQKVPSGHYAAVTDIAWARSGEYLLSVSADQTTRIFASWQNEASFGGSDCWHEIARPQVHGHDINCVTIIHGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAISQKSSFPEDFQVDVQILGANMSALGLSQKPIYVHSTHESPERNVNDGLDTLETIPDAVPVVLTEPPIEEKLAWHTLWPESHKLYGHGNELFSLCCDQGGKLVASSCKAQSAKVAEIWLWQVGSWKAVGRLQSHSLTVTQIEFSHDDNLLLSVSRDRQFSVFAIKRTGVDEVSHQLIARQEAHKRIIWACSWNPFGHEFATGSRDKTVKIWAVDKGSSVKQLMTLPQFTSSVTALSWFALDHQRNDGFLAVGMESGLVELWSLSVTRTVDDCKSVLLASCGADHCVRIFEVNVA* 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3742314 3754441 + Vvi1g358 Vvi1g358 769558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g358 801 Pfam WD domain, G-beta repeat 403 440 IPR001680 GO:0005515
Vvi1g358 801 Pfam WD domain, G-beta repeat 215 256 IPR001680 GO:0005515
Vvi1g358 801 Pfam WD domain, G-beta repeat 49 96 IPR001680 GO:0005515
Vvi1g358 801 Pfam WD domain, G-beta repeat 110 146 IPR001680 GO:0005515
Vvi1g358 801 Pfam WD domain, G-beta repeat 301 344 IPR001680 GO:0005515
Vvi1g358 801 Pfam WD domain, G-beta repeat 688 718 IPR001680 GO:0005515
Vvi1g358 801 Gene3D - 579 676 IPR015943 GO:0005515
Vvi1g358 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 265 IPR001680 GO:0005515
Vvi1g358 801 Gene3D - 297 398 IPR015943 GO:0005515
Vvi1g358 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 724 - -
Vvi1g358 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 728 IPR001680 GO:0005515
Vvi1g358 801 Gene3D - 399 548 IPR015943 GO:0005515
Vvi1g358 801 Gene3D - 8 162 IPR015943 GO:0005515
Vvi1g358 801 PANTHER WD REPEAT-CONTAINING 5 778 - -
Vvi1g358 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 440 IPR001680 GO:0005515
Vvi1g358 801 SUPERFAMILY WD40 repeat-like 189 728 IPR036322 GO:0005515
Vvi1g358 801 Gene3D - 677 801 IPR015943 GO:0005515
Vvi1g358 801 PRINTS G protein beta WD-40 repeat signature 134 148 IPR020472 -
Vvi1g358 801 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Vvi1g358 801 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Vvi1g358 801 PANTHER ELONGATOR COMPLEX PROTEIN 2 5 778 - -
Vvi1g358 801 SMART WD40_4 680 719 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 102 147 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 584 623 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 294 345 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 207 256 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 402 441 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 631 670 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 725 797 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 47 97 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 451 495 IPR001680 GO:0005515
Vvi1g358 801 SMART WD40_4 355 394 IPR001680 GO:0005515
Vvi1g358 801 SUPERFAMILY WD40 repeat-like 21 394 IPR036322 GO:0005515
Vvi1g358 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 672 IPR001680 GO:0005515
Vvi1g358 801 Gene3D - 163 296 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g358 K11374 ELP2; elongator complex protein 2 - vvi:100257715 1627.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30