Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g36 ATGAGATATTGTTCTTTGCCTGCTAGAGATCTCCGCCTTTTGGACCCTTTATTCATTTATCCTTCTACAATATTAGGCCGGGAGAAGGCTATTGTGGTCAATCTTGAACAAATTAGGTGTATAATCACAGCTGAAGAGGTTATCCTGATGAATTCCTTGGATGGTTGTGTTGTTCAGTATAAGTCAGAATTGTGCAAACGTCTTCAAAATAATAAAGATCAAGCTGATGACTTGCCTTTTGAATTTCGGGCACTGGAGCTGGCTTTGGAACTAACATGCATGTCTCTTGATGCTCAGGTTAAAGAGCTGGAAATGGAGATATATCCCGTGCTAGATGAACTAGCATCATCCATTAGCACTCTTAATCTAGAACGTGTTCGTAGATTCAAAGGACACCTTCTTGCTCTTACTCAACGAGTTCAAAAGGTTCGTGATGAAATAGAACATCTCATGGATGATGATGGTGACATGGCTGAGATGTACCTGACAGAAAAGAAACAGAGAATGGAGGCTTATCCCTGGAATGACCTACATTCACTGAGTAATGTGTCAGGTGGGACCAGAGTGCTACCAGCATCTGCACCCGTTTCACCGGTGGAGTCGATCAGTGGATCCCAGAGATTGCAAAGGGCTTTTAGCACTATAATGAATTCAAGCAAACATGGAAGCTTTACGGGTTCATCTAATAATGGGGAAAATATCGAACAACTTGAAATGCTACTTGAAGCATATTTTGTTTTCATTGACAATACTCTCAACAAGCTGTTATCGCTCAAGGAATACATTGATGATACTGAAGACTTGATCAACATTAAACTTGGCAATGTTCAGAACCAGCTCATACAATTCGAGTTGCTTCTGACAGCAGCCACCTTCGTGGCCACAATATTTGCTGCAGTGACAGGAGTGTTTGGAATGAACTTCACAGCCACAATTTTTGATTACCCGTCAGCATTTAACTGGGTACTGGTTATCACTGGAGTTATCTGTGGCTTCTTATACTTCTCTTTCTTGTTGTATTTCCGGCACAAGAAAGTTTTTCCATCATAG 1050 41.05 MRYCSLPARDLRLLDPLFIYPSTILGREKAIVVNLEQIRCIITAEEVILMNSLDGCVVQYKSELCKRLQNNKDQADDLPFEFRALELALELTCMSLDAQVKELEMEIYPVLDELASSISTLNLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMYLTEKKQRMEAYPWNDLHSLSNVSGGTRVLPASAPVSPVESISGSQRLQRAFSTIMNSSKHGSFTGSSNNGENIEQLEMLLEAYFVFIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAAVTGVFGMNFTATIFDYPSAFNWVLVITGVICGFLYFSFLLYFRHKKVFPS* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 453462 457950 + Vvi1g36 Vvi1g36 769236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g36 349 Gene3D - 1 52 - -
Vvi1g36 349 CDD Mrs2_Mfm1p-like 1 346 IPR039204 -
Vvi1g36 349 Gene3D Magnesium transport protein CorA, transmembrane region 56 280 - -
Vvi1g36 349 Gene3D Magnesium transport protein CorA, transmembrane region 287 345 - -
Vvi1g36 349 PANTHER MAGNESIUM TRANSPORTER MRS2-5 1 348 - -
Vvi1g36 349 Pfam CorA-like Mg2+ transporter protein 239 337 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi1g36 349 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 348 IPR039204 -
Vvi1g36 349 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 286 338 IPR045863 -
Vvi1g36 349 Coils Coil 133 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g36 K16075 MRS2, MFM1; magnesium transporter - vvi:100262794 656.751
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g36 . Blo16g01085 . Bda11g01176 Bpe13g01373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0537 . . . . . . . Bda11g01176 . . . Bma06g00739 . . . . . . . . Cpe07g00089 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi9g871 . 1 355 MRS2 Gene Family AT1G16010 83.2 4.4e-164 574.7
Vvi1g36 . 1 348 MRS2 Gene Family AT1G16010 61.3 8.1e-110 394.4
Vvi9g869 . 30 225 MRS2 Gene Family AT1G16010 79.6 8.5e-75 278.1
Vvi7g27 . 11 207 MRS2 Gene Family AT1G16010 51.2 4.9e-46 182.6
Vvi5g607 . 1 362 MRS2 Gene Family AT5G64560 82.0 1.6e-162 569.3
Vvi7g27 . 1 207 MRS2 Gene Family AT5G64560 73.0 4.7e-74 275.4
Vvi7g28 . 1 142 MRS2 Gene Family AT5G64560 80.4 1.6e-58 223.8
Vvi3g735 . 1 436 MRS2 Gene Family AT3G19640 70.0 2.1e-151 532.7
Vvi7g1277 . 22 441 MRS2 Gene Family AT3G19640 51.8 3.3e-104 375.9
Vvi12g1064 . 1 380 MRS2 Gene Family AT3G58970 74.2 5.7e-148 521.2
Vvi1g36 . 1 348 MRS2 Gene Family AT2G03620 71.9 5.7e-129 458.0
Vvi9g871 . 1 355 MRS2 Gene Family AT2G03620 57.4 9.8e-97 350.9
Vvi9g869 . 46 228 MRS2 Gene Family AT2G03620 58.1 5.3e-42 169.1
Vvi12g1064 . 2 378 MRS2 Gene Family AT4G28580 52.8 1.5e-97 353.6
Vvi5g607 . 1 324 MRS2 Gene Family AT5G09690 76.3 1.7e-128 456.1
Vvi9g871 . 1 290 MRS2 Gene Family AT5G09690 53.1 1.8e-66 250.0
Vvi7g27 . 1 207 MRS2 Gene Family AT5G09690 65.9 2.0e-65 246.5
Vvi5g607 . 7 284 MRS2 Gene Family AT5G09720 67.3 8.7e-92 334.0
Vvi7g27 . 7 207 MRS2 Gene Family AT5G09720 61.6 4.1e-57 218.8
Vvi9g871 . 1 355 MRS2 Gene Family AT1G80900 80.5 2.1e-158 555.8
Vvi1g36 . 1 348 MRS2 Gene Family AT1G80900 60.5 4.9e-107 385.2
Vvi9g869 . 30 225 MRS2 Gene Family AT1G80900 78.6 1.6e-73 273.9
Vvi7g27 . 11 207 MRS2 Gene Family AT1G80900 50.2 5.4e-45 179.1
Vvi6g1134 . 148 487 MRS2 Gene Family AT5G22830 84.1 1.6e-161 566.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34