Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g367 ATGTTTGGTATGATGTCCTCCAGGTATCCTGGCAAGATAGTTGCAGAGCAAGCCCTGAGAAATGGGGCATGTTTCTTTCTTCAGAAACCTGTTTCTGACAATGATCTGAGAGACTTATGGCAACATGTGTATCGGAAGAGAAGGTCTTCGGAATTTCCAAAAGAGAGGAGTAAATCTCAAGGTGTGAAGATCAAAGAAGAATCCGCTAGTGCGTTTAGAAATGATTGGTTTAGGGAGGTGGGTAGTGTGTCCAGGACCAACTCTAGGACTGCCAATGAAAATGATTTGCATGGCACTAATCATGAACAGTGGATAGCTGATCTAAAAGGGAAGAATAAGCAAATCAAACCGGACAGTGGCCTAGTTAAGGGGGATGCACAAACTACTGAACGTGAACTGTTGAGGATGGCAGCTGACCAAAAACCAGGATGCAATGATAGAAAGAGATCAAATGAAGACAACACAGAAAAAAGAAAGTGCAAAAGGAAAATCTACTCTGAACAAATTCATTCCCAAGGTATAAGCCCCATTGAAGAAGACGGGAATGAAAAGAAACAGAAGAGTAGCACCTTGGAGAAAAGGCAATGTATGAGGTGGACTCCAGATCTTCACTTCAAATTTACAGAAGCCATCAGAAAACTGGGTGAAAAAAAGGCTAGCCCAAAAGCAATACTAGAGTTGATGAAGGTGCCGGATTTGAGACAAGGCCATATTTCCAGCCATCTGCAGAAATACAAAGCACAAGTTCAGAGCATGTTGGACACCTGTGGGAATACTCCACTGCCACTTCCATCTTCTGTGAATATATCAACATCCAATGGCAATCGCCAAATGGGAGTTCCACAATTCCAGGAGCGGCAGGGCTCTGTTGGAGTTAACGCTAATTCATCATTGCAGCTTCATCCTCCACTCTCTCTGAAGGCTAGTCCTGTACCAGGAAATGCAGGGCCTAGCAACTCAACTGAGCACAAGCAGCATCCAAATCCAACCAAAAACAACAATGGAGTTCAAATGGTGGGTTATGGAAAGCATCAAGGGACAAGCCAAATAAGGGAGAGGACAGGACCTTTTCCAAGTGATGTCAACATGAATGAGAATGGAAAGGGGAAACAGCCTCTGGGATTCCAAGGGAACAGTGATCCATATGTGGCACTAGATCAGGCTGCTCTTCATAGATTGACTGCTCAGCAGTGTTGGCAAAGTCTAACCCAGTTTCCAACACCATTTAAGAGGTTAACTGAGGCGCAAAATTTGGTGCCTAGGCTGACTTCTTCTGCCGGTAGACCCAACTCAGACATTCCTGATGGCATTAATACTACTGATGATGCTATACCACGACTGGCTCATCTAGCCAATTCAGCAAATCAGAGCGTTGCCCATGCCCCAGGTACAGGCCATGGTGGATTGGATGAGAGCGGTTATGATTGGTTGACTGAATGGTTAAGCAGATCTCTAGATGAAGATAATCCAGATGCTCGTAACTTCGATGGGCCAGACAAGTAA 1503 44.64 MFGMMSSRYPGKIVAEQALRNGACFFLQKPVSDNDLRDLWQHVYRKRRSSEFPKERSKSQGVKIKEESASAFRNDWFREVGSVSRTNSRTANENDLHGTNHEQWIADLKGKNKQIKPDSGLVKGDAQTTERELLRMAADQKPGCNDRKRSNEDNTEKRKCKRKIYSEQIHSQGISPIEEDGNEKKQKSSTLEKRQCMRWTPDLHFKFTEAIRKLGEKKASPKAILELMKVPDLRQGHISSHLQKYKAQVQSMLDTCGNTPLPLPSSVNISTSNGNRQMGVPQFQERQGSVGVNANSSLQLHPPLSLKASPVPGNAGPSNSTEHKQHPNPTKNNNGVQMVGYGKHQGTSQIRERTGPFPSDVNMNENGKGKQPLGFQGNSDPYVALDQAALHRLTAQQCWQSLTQFPTPFKRLTEAQNLVPRLTSSAGRPNSDIPDGINTTDDAIPRLAHLANSANQSVAHAPGTGHGGLDESGYDWLTEWLSRSLDEDNPDARNFDGPDK* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3833981 3837984 - Vvi1g367 Vvi1g367 769567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g367 500 SUPERFAMILY Homeodomain-like 193 251 IPR009057 -
Vvi1g367 500 Gene3D - 190 252 - -
Vvi1g367 500 ProSiteProfiles Response regulatory domain profile. 1 44 IPR001789 GO:0000160
Vvi1g367 500 MobiDBLite consensus disorder prediction 312 373 - -
Vvi1g367 500 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 16 491 - -
Vvi1g367 500 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 247 IPR006447 GO:0003677
Vvi1g367 500 MobiDBLite consensus disorder prediction 139 166 - -
Vvi1g367 500 MobiDBLite consensus disorder prediction 139 192 - -
Vvi1g367 500 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 491 IPR044841 GO:0003700|GO:0006355
Vvi1g367 500 MobiDBLite consensus disorder prediction 294 379 - -
Vvi1g367 500 Gene3D - 4 169 - -
Vvi1g367 500 MobiDBLite consensus disorder prediction 177 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g367 - - - vvi:104882333 1020.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14505 None None None None Vvi TF