Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g370 ATGAATTTCTCCTGTGGTGATCGCTTGGTTGCTTCGGTGGTTTCATCTGTTTGTGTCACTATGTCAGCTCATGTGGACAAAGACACAGATCCTTCTGACCAAGCTCATCACTTCTCCACAAGCGTGAATTCTCACTGCCCAATTCGACCATCCTTTTCGGCTATGTCATTCTCTGTTTCAATACTCAGTCCAGAAAGCAGTAGTACTGATTATCTCGATAGTGGACTTTCACCTACGACAACACGAGGGCCTCCATTTGATTCATCTGATCTGGAGAGTGCACATTCAGAAGCCAGAGAAAATGCCATGATGAGATACAAAGAGAAGAAGAAGGTCCGAATGAATGAAAAGCAAATCCGACATACACCTCGGAAAGCTGATCCAAGAAAGCGGGTAAAAGGTCAATCACTAAAAGCAGAAGGCTACGAATCTGACAGTGTCAATGCGACACCAAGTTATTGA 462 44.16 MNFSCGDRLVASVVSSVCVTMSAHVDKDTDPSDQAHHFSTSVNSHCPIRPSFSAMSFSVSILSPESSSTDYLDSGLSPTTTRGPPFDSSDLESAHSEARENAMMRYKEKKKVRMNEKQIRHTPRKADPRKRVKGQSLKAEGYESDSVNATPSY* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3854481 3857650 + Vvi1g370 Vvi1g370 769570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g370 153 ProSiteProfiles CCT domain profile. 99 139 IPR010402 GO:0005515
Vvi1g370 153 MobiDBLite consensus disorder prediction 92 138 - -
Vvi1g370 153 MobiDBLite consensus disorder prediction 64 87 - -
Vvi1g370 153 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 21 147 - -
Vvi1g370 153 Pfam CCT motif 99 139 IPR010402 GO:0005515
Vvi1g370 153 MobiDBLite consensus disorder prediction 64 153 - -
Vvi1g370 153 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 21 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g370 - - - vvi:109123405 289.656
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14506 PF06203 CCT 7.60E-08 CL0281 Vvi TR