Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g371 ATGATGTGGGCCATTGCAGGCCAATGGCTGAAGGGCGGTTCTGTTAGTAACTTTCTTTCTCCCCCCCTCTCTCTCTCTGCGGAACAAGAGAAGAAGCTCTCTCCCCTTTTTGACACCTGGTTCAGCAAGAACCCGACGCAAATGCAGAAAGACATTTCCATCTCTCCTGGCGGCATTAAATTCTTCTCATCACCGGCTGGTAACCGGTCGGACGGCCTCGGTTTCCCTTCTCTCTACTCTTCCATTTTCTCGCCAAAACCATCCCTCTCAAACTCCGTCTCACTCACACCGTCCGAGTACTCTACCGATGAGGATGTCAACAACAATAGTAACAACAACAGCACCCCAACCTCCATAGATAACGTTCAAGCACTCGAAGTCCCATATTCTCCGCCGTCTCGCCTCATATACGAGCACCAAGACCTCATCAACCGCCATAACTTGTGCCTCAATCACCTCCGTGAAACCGCTCAAGAAGCCGAAGTACTTCGTCACGAGAACTCGAATCTCCGCATCGCCAACAGAGATCTCAACAAGCGATTGAGTCTCCTGATCCAAAATTCTATTCAGAACCGATTCGTCAACTCTGAGTATTCTTCCTCGAGGTCAATGGCTGATGAATTTCGCCGTCTCGGTCTTGGAGATGGTAACGAGACTCGTAGTTGGGATGATGAAATATCTAATGAGAGTCCAACGAGTGTGATCGAGAGTGACCGGGTCGAGAGGATTGACGTGGAACGAATTACGCTGCCAAAGAGCATCTCCGTGAGGTCGAATGGGTACTTGAAGATGAGTCAACCCGGAACGAGTGAAGGTGGTCGGACTCGGATCCCGAATCGGCTTCGAACTACGAGCCCACTCAATGGAACGCAAAAGGTTTACGTGCGTGGAGTCAAGAAAGAGGAGGAACCAGTGGAACTGGAGGTGTACAACCAAGGCATGTTCAAGACTGAGTTGTGTAATAAGTGGCAGGAGAGCGGCACTTGCCCGTATGGCGATCACTGCCAGTTTGCTCATGGCATCGAGGAACTCCGCCCGGTCATACGCCACCCACGCTACAAGACTGAAGTCTGCCGCATGGTCCTCGCTGGTGATGCCTGCCCATATGGTCACCGCTGCCACTTTCGCCATGCCTTAACTGAGCAGGAAAGGTTCATGGGACAACTCCAGCCAAGGGCAATCAAGCTGGACAGATAA 1197 51.46 MMWAIAGQWLKGGSVSNFLSPPLSLSAEQEKKLSPLFDTWFSKNPTQMQKDISISPGGIKFFSSPAGNRSDGLGFPSLYSSIFSPKPSLSNSVSLTPSEYSTDEDVNNNSNNNSTPTSIDNVQALEVPYSPPSRLIYEHQDLINRHNLCLNHLRETAQEAEVLRHENSNLRIANRDLNKRLSLLIQNSIQNRFVNSEYSSSRSMADEFRRLGLGDGNETRSWDDEISNESPTSVIESDRVERIDVERITLPKSISVRSNGYLKMSQPGTSEGGRTRIPNRLRTTSPLNGTQKVYVRGVKKEEEPVELEVYNQGMFKTELCNKWQESGTCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGDACPYGHRCHFRHALTEQERFMGQLQPRAIKLDR* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3858748 3861883 + Vvi1g371 Vvi1g371 769571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g371 398 MobiDBLite consensus disorder prediction 86 118 - -
Vvi1g371 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 340 IPR000571 GO:0046872
Vvi1g371 398 Coils Coil 153 180 - -
Vvi1g371 398 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vvi1g371 398 Gene3D - 348 384 - -
Vvi1g371 398 Gene3D - 308 347 - -
Vvi1g371 398 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 92 390 - -
Vvi1g371 398 SUPERFAMILY CCCH zinc finger 311 346 IPR036855 GO:0046872
Vvi1g371 398 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Vvi1g371 398 SUPERFAMILY CCCH zinc finger 348 383 IPR036855 GO:0046872
Vvi1g371 398 PANTHER CCCH ZINC FINGER/TIS11-RELATED 92 390 IPR045877 GO:0003729
Vvi1g371 398 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Vvi1g371 398 SMART c3hfinal6 314 341 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g371 K18753 ZFP36L; butyrate response factor - vvi:100242335 702.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g371 Vvi14g843 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14507 PF00642 zf-CCCH 1.60E-11 CL0537 Vvi TF