Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g375 ATGGCCAGCGTATCAGCAAGTAATCAGGTGAATACTCTGTGCCTTGGAGTATCGGAGCCTATTTCAACTGCTGGGCCCACCGAGTTTGATCTGATTAAGACCCGAGAATTGGAAAAGTTTCTTGCAGATTCTGGATTGTATGAAACTCGGGAAGAAGCTATAAGGAGGGAGGAAGTTCTAGGGAGAGTAGATCAGATAGTGAAGGTATGGGTGAAAACTGTTAGCCGTGCTAAAGGGTTTAATGAACAGCTGGTTCATGAAGCAAATGCAAAGATCTTCACGTTTGGTTCTTATCGATTGGGTGTGCATGGCCCAGGTGCTGATATAGACACATTATGTGTTGGACCTAGACATGCTACTCGAGATGAAGATTTTTTCGGTGAACTTCATAGGATGCTAGCAGAAACACCTGAAGTACAAGAACTGCATCCTGTGCCTGATGCTCATGTTCCTGTCATGAAGTTCAAGTTCAATGGGGTTTCTATAGATCTTCTTTATGCAAGACTATCACTCTGGGTTATTCCTGAAGACTTGGATATTTCACAAGAAACAATACTACAAAATGTAGATGAGCAGACAGTTCGTAGCCTCAATGGTTGCAGAGTTACTGATCAAATTTTGCGCCTGGTCCCAAATATTCAGAATTTTCGCACTACATTGAGATGCATGAGATTCTGGGCAAAGCGGCGTGGGGTTTATTCAAATGTTTCTGGTTTCCTTGGTGGTATAAATTGGGCATTGCTTGTTGCTCGCATATGCCAGCTATACCCAAATGCAGTACCTAGTACCTTGGTATCTCGGTTCTTCAGGGTCTACACGCAGTGGCGTTGGCCTAATCCAGTTATGCTATGTCCTATTGAAGAAAAATGCCTTGGACTTCCTGTTTGGGATCCAAGAAGAAACATCAAAGATAGGAACCATCTGATGCCTATAATAACTCCTGCATATCCTTCGATGAATTCAAGCTACAATGTTAGTTGGAGCACATTACGTATTATGGAAGAAGAGCTTCAGAGGGGAAATGAAATAGTTAAGGAGATGGAGACAGAAAACACTGGCTGGATCACTCTTTTTGAACCTTTCCTTTTCTTTGAAGCATACAAGAACTATCTGCAGATAGATATAACTGCTGAGAATGATGTTGACTTGAGGAACTGGAAAGGTTGGGTTGAATCTCGACTTCGTCTACTTACTCGGAAGATTGAGAGGGACACAGGTGGTATGCTTCAGTGCCATCCACACCCTGCAGAGTTTTCTGACACATCCAGATCATTCCATTACTGTTATTTCATGGGTTTACGGCGGAAAGAAGGCAGTGCTGCCCAGGAAGGTGAACAATTTGATATAAGGTTAACTGTTGATGATTTTAAGAACACTGTATGGATGTATTCATCCTGGAAACGAGGAATGTGGATCCATGTATGCCATATAAGACGCAAAAACATCCCAAATTTTGTCTTCCCTGGTGGAGTCCGGCCTCCCCAACCCATGAAAGTTGCTGGAGAACAAGGACAAGTTTCAAAACCAATGGGCTTTAACTCTCAGAAGAGAAAAAGGGATGAGATAGATGCTGGGAGTCACCCAAGAGAATCCACATCTTTAGTGGAGAATGTGGAGTCAGATTTGCAAGGGGAAGTAAAACTGGAACAGGTTGAGGTTAATGTAGGGGACAGTTTAACCAAGGTAATATGTTCATCTGAGAATTCTTCACACAATAGTATTGAGCTTGAAGGATATGCTAGATGCAGCCAACCCCTTGGGGCTGCATCTTCTGCTAGTGGTTCCTTGAGTTTAGGAAGGGCGCTTGTTATTGAGACAACCTCTGAGCCACTTGTTCATCAATGTTCCTCAAAAGAAGTTGGTGAGTCTCAAGTAGGGTTGGTTGATCAAGTCCAGAATTTTGATGTGGGTAAAAGAGTCAATTGTGTGCAGTCCTCAACAGCAGAGCGAGGGATGGCAGCAGCAGCAGCAGGGCAAGGGTTCAGTCCTTGCTCCAGTCTCTTTCAAAATGGGGGTTTAGAGGAGCTTGAGGATGCTGAGTTGACTGCTCCATTCTACCATGGAAATCCTGGTGCATCAAGTACCCCACAGAAGCACCTTATCAGGTTAAGTGTGAATTCTTTGATGGGTCTGCAGAGCCAGCTGAACGATGTCTCATCCGATTCGATCCCTCTACTTCTGGTGGCAATCATCGCCAACTGCGTAGCTTATATTCGGTCCTTGCTTTTGGGGTTATTTCAGTCCATGGGCCTCTCTCGATTCGATGCGGATGAAGTGGAGGATGGGCTACTGGGTTTTCCTGCCTATGTTTTTTTCCCATTGGTATCCAAATTCCAAGCCAAGCAGAAAAATCACTGCAGTTTAGAAATGAATCCGCATGTGGGGATGAGTTTAATGAGCCCACCATAG 2409 44.08 MASVSASNQVNTLCLGVSEPISTAGPTEFDLIKTRELEKFLADSGLYETREEAIRREEVLGRVDQIVKVWVKTVSRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELHRMLAETPEVQELHPVPDAHVPVMKFKFNGVSIDLLYARLSLWVIPEDLDISQETILQNVDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNAVPSTLVSRFFRVYTQWRWPNPVMLCPIEEKCLGLPVWDPRRNIKDRNHLMPIITPAYPSMNSSYNVSWSTLRIMEEELQRGNEIVKEMETENTGWITLFEPFLFFEAYKNYLQIDITAENDVDLRNWKGWVESRLRLLTRKIERDTGGMLQCHPHPAEFSDTSRSFHYCYFMGLRRKEGSAAQEGEQFDIRLTVDDFKNTVWMYSSWKRGMWIHVCHIRRKNIPNFVFPGGVRPPQPMKVAGEQGQVSKPMGFNSQKRKRDEIDAGSHPRESTSLVENVESDLQGEVKLEQVEVNVGDSLTKVICSSENSSHNSIELEGYARCSQPLGAASSASGSLSLGRALVIETTSEPLVHQCSSKEVGESQVGLVDQVQNFDVGKRVNCVQSSTAERGMAAAAAGQGFSPCSSLFQNGGLEELEDAELTAPFYHGNPGASSTPQKHLIRLSVNSLMGLQSQLNDVSSDSIPLLLVAIIANCVAYIRSLLLGLFQSMGLSRFDADEVEDGLLGFPAYVFFPLVSKFQAKQKNHCSLEMNPHVGMSLMSPP* 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3891702 3907393 - Vvi1g375 Vvi1g375 769575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g375 802 Gene3D - 16 358 - -
Vvi1g375 802 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 13 539 - -
Vvi1g375 802 Coils Coil 330 350 - -
Vvi1g375 802 CDD NT_PAP_TUTase 55 210 - -
Vvi1g375 802 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vvi1g375 802 MobiDBLite consensus disorder prediction 494 533 - -
Vvi1g375 802 Gene3D Poly(A) polymerase predicted RNA binding domain 363 477 - -
Vvi1g375 802 PANTHER POLY A POLYMERASE 13 539 - -
Vvi1g375 802 MobiDBLite consensus disorder prediction 513 527 - -
Vvi1g375 802 Pfam Poly(A) polymerase central domain 16 360 IPR007012 GO:0004652|GO:0043631
Vvi1g375 802 SUPERFAMILY PAP/OAS1 substrate-binding domain 211 360 - -
Vvi1g375 802 SUPERFAMILY Nucleotidyltransferase 16 209 IPR043519 -
Vvi1g375 802 Pfam Poly(A) polymerase predicted RNA binding domain 363 422 IPR007010 GO:0003723|GO:0043631
Vvi1g375 802 Gene3D Beta Polymerase, domain 2 48 204 IPR043519 -
Vvi1g375 802 Pfam Nucleotidyltransferase domain 77 168 IPR002934 GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g375 K14376 PAP; poly(A) polymerase [EC:2.7.7.19] - vvi:100252483 1418.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g375 Vvi17g270 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003713 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 4 4 46