Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g378 ATGGCCTCTGTGACCTTTGCGAAGTTTAACGCCTCGTCTTCGCAGTGGATCGGACAACAGTCCTTCTCTCAACGCCAGGGATCGTCCGCTCGCTTCCCGGCACGCAGAGTCTCGGTCCCGATCCGTGCCGGGTCGTACTCCGAGGAACTCGTTCAGACTGCTAAAACTGTTGCATCACCTGGCCGTGGTATACTAGCCATTGATGAGTCAAATGCTACCTGCGGGAAGAGGTTGGCATCTATTGGTCTGGACAATACAGAACCCAACCGTCAGGCCTATAGACAACTTCTACTGACCACTCCTGGCCTTGGTGAATATATTTCTGGGGCCATCCTTTTTGAGGAAACACTGTACCAGTCAACAACTGATGGAAAGAAGTTTGTGGACTGCTTGCGTGAAAAGAAAATTGTGCCTGGCATCAAAGTTGATAAGGGTTTGGTTCCTCTACCAGGATCAAACAATGAATCTTGGTGCCAAGGCCTGGATGGTTTGGCTTCAAGATCTGCTGAATACTATAAGCAAGGTGCTCGCTTTGCAAAGTGGCGCACTGTTGTTAGCATTCCCTGTGGTCCTTCTGCCTTGGCTGTCAAAGAAGCTGCATGGGGTCTTGCACGCTATGCTGCTATTTCTCAGGACAATGGTCTTGTGCCCATAGTAGAACCTGAGATTCTTCTTGATGGGGATCACCCAATTGATAGGACACTCGAAGTTGCAGAGAAAGTGTGGTCGGAGGTCTTCTTTTACTTGGCACAAAACAATGTCTTATTTGAAGGAATCCTACTTAAGCCTAGCATGGTAACCCCAGGAGCTGAACACAAGGAGAAGGCTTCTCCAGAGACCATCGCCAAATATACACTAACAATGCTTAGAAGGAGAGTACCTCCTGCAGTTCCTGGAATCATGTTTTTGTCTGGAGGGCAATCTGAAGTGGAAGCAACATTAAACCTGAATGCAATGAATCAAAGCCCCAACCCATGGCATGTTTCCTTCTCATATGCTCTTCGGGCAAAGGCAAACTCCCTGGCTCAGCTTGGAAAGTACTCTGCTGAAGGTGAAAGTGAGGAAGCTAAGAAAGGAATGTTTGTCCAGGGCTATACCTACTAA 1104 48.19 MASVTFAKFNASSSQWIGQQSFSQRQGSSARFPARRVSVPIRAGSYSEELVQTAKTVASPGRGILAIDESNATCGKRLASIGLDNTEPNRQAYRQLLLTTPGLGEYISGAILFEETLYQSTTDGKKFVDCLREKKIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIDRTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYALRAKANSLAQLGKYSAEGESEEAKKGMFVQGYTY* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3939295 3943923 + Vvi1g378 Vvi1g378 769578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g378 367 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 28 333 IPR000741 GO:0004332|GO:0006096
Vvi1g378 367 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 335 367 IPR000741 GO:0004332|GO:0006096
Vvi1g378 367 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 28 333 - -
Vvi1g378 367 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 335 367 - -
Vvi1g378 367 Gene3D Aldolase class I 34 366 IPR013785 -
Vvi1g378 367 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 254 264 IPR029768 -
Vvi1g378 367 SUPERFAMILY Aldolase 40 367 - -
Vvi1g378 367 CDD FBP_aldolase_I_a 47 347 - -
Vvi1g378 367 Pfam Fructose-bisphosphate aldolase class-I 49 333 IPR000741 GO:0004332|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g378 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] - vvi:100267988 710.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g378 . . . Bda11g00154 Bpe13g01045 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0799 Cone6ag0419 Cone9ag0443 . Csa05g02050 . . . . . Bda11g00154 . . . Bma06g01095 . Cmo04g02185 . Cma04g02084 . Car04g02023 . Cpe13g00387 . Bhi12g00859 . . . Hepe02g2683 . Lcy10g1461 Cla01g00585 Cam01g0611 Cec01g0602 Cco01g0627 Clacu01g0603 Cmu01g0576 Cre09g1929 Lsi09g00634 . Chy09g00880 Cme09g01414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001279 3 2 2 3 3 2 4 2 2 2 2 2 3 2 2 4 2 6 3 2 2 3 2 1 2 2 2 4 2 3 76