Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g379 ATGAAGGACCGCCCGCCTCCCTCATGCGTTTCCCGCTATATCCCTCCTCATCATCGTCTGCGCTCCGCCGTCACCTCCTCTGCCTCCCCCAATCTCAACGCCGCTTCTCTTGACTCCACGTCTCGGGATCATCAAGGCACGCTTCTGAACCCTAGGAACACTTCTCTTCCTCACTCCCAACCTCAGAAGCTCCAACAGAAGGATAATTCACTCTATGATTTCCTGTACGAGGAGGTGTCTGAGGAAGGCTCTGATCGCGAAATTGAGTCGTCGTCGCATGGGGTGAGTTTGATTCATTTGCTTGTTTGTGAATTTGGGGGTGCTTCAGCCCCTGATACCATTGATGAGTGGAAGTGGAAGTTTACTATGCTTTTACGCAACAAAGACAAACAAGAGTTGGTGTCAAGGGAGAAAAAGGACAGGCGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTACAGATTTGATCTAGATGACAGGCGCCCACAGAGGGAGGTAATTCTACCTCTTGGTTTGGATAGAAGAGTGGAAGCCCATCTTGAGGAGTACCTTTCTCAAAAGTTTACGACAAATGAAAACTTTCAAGATATTGCCTTCTCTAGATCAAGTAGTACTAGTAGCATTGCTACTGATGAAGGGCTTTTTGAGCAACCAGAGCCACTTGCAGTTAGTAGATCTGTCATTGAGAAAATTGTTTGGCGGAGGAGTTTGCAACTGCGGAATCAGCAACAAGCATGGCAGGAATCTACAGAAGGTAGAAAAATGCTGGAATTTCGTGGAAGTCTCCCTGCTTCCAAAGAGAAGGATGCATTACTAACAGCCATTTCAGGAAATCAGGTGGTTATTGTCTCAGGTGAAACTGGTTGTGGCAAGACCACTCAAATTCCCCAATTCATCTTAGAATCTGAGATTGAATCTGTTCGTGGAGCTGTATGTAGTATTATATGTACCCAGCCTAGAAGAATATCTGCCATGTCTGTTTCTGAAAGAGTTGCTGCAGAAAGAGGGGAGAAATTGGGTGAATCCGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTACTTTGATGGGGCTCCAGTTGTCCATATCCCGGGTTTTACATACCCAATTAGAACGTATTTCCTGGAAAATATTCTGGAAATGACAGGATACAGATTGACTCCGTACAATCAAGTTGATGATTATGGTCAGGAAAAGATGTGGAAAATGAACAAACAAGCTCCAAGAAAGAGGAAGAGCCAACTTGCTCCTGTAGTCGAGGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAAACCTTTTATGCCATATATGTGAGAATGAATGTCCTGGTGCTGTTTTAGTCTTTATGACTGGGTGGGATGACATAAGTTCTCTGAAAGATAAGCTCCAAGCTCATCCCATATTGGGAGATTCAGACCAAGTTTTGTTGCTCACATGCCATGGTTCTATGGCTAGTGCAGAGCAGCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAAGAGACATCATATGATGCACTGAATAACACTCCGTGTTTGCTTCCTTCCTGGATCTCTAAGGTTTCTGCTCAACAGAGAAGAGGAAGAGCTGGCCGTGTTCAACCAGGAAAATGTTACCATCTCTATCCTCGATGTGTATATGATGCTTTTGCAGATTATCAATTGCCTGAAATTTTGAGGACACCTTTACAGTCCCTTTGCCTGCAAATCAAAAGTTTAAAACTTGGAAGTATTTCTGAGTTCCTATCTAGGGCTTTGCAGTCTCCAGAGTTGCTAGCGGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAGGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGCTGGACTTAGTGTTAGAGATCCATTCTTAACACCATTGGACAAGAAGGATCTTGCAGAGGCTGCAAAAGCTCAATTTTCTCATGACTACAGTGACCATCTTGCACTTGTTCGGGCTTATGAGGGCTGGAAAGATGCTGAAAAGGACCAAATTGGATATGAATACTGCTGGAAAAATTTTCTTTCTGCACAATCAATGAAAGCTATTGATTCACTTCGGAAGGAGTTCTTCTCTTTGCTAAAGGATACTGACCTGGTTGATGGCAACATGGCCACCTACAATGCATGGAGCTATGATGAGCATCTCATTCGAGCAGTTATTTGCTGTGGCCTGTATCCTGGAATTTGCTCTGTTGTGCAAAATGAAAAGTCATTCTCATTGAAAACAATGGAGGATGGTCAAGTGCTCTTGCATTCGAATTCAGTCAATGCTCGAGAATGTAAAATTCCATATCCATGGCTAGTTTTCAATGAGAAGATAAAAGTAAATTCTGTTTTTCTCCGGGATTCAACAGCTGTGTCTGATTCAGTGCTTCTTCTATTTGGGGGCGACATCTTGAGAGGGGATGGTGATGGGCACTTGAAAATGTTGGGAGGGTACTTGGAATTCTTCATGAAACCTGCTATAGCAGAAATGTATCAAAGCTTAAGGAGAGAACTTGATGAGCTAATTCAGAATAAACTACTGAATCCCAGAATGGGCATACACATGTATCATGAGCTCCTTTCTGCAGTGCGACTGTTGATCTCGGAGGACCAATGTGATGGCCGATTTGTGTTTAGCCACCAGGTTGGCCGCCAGGTCGTAAAGCCCTCAAAAACATCTGTTACAGTGATGCCAAAAGCCTTGGTTTCAAGGACTGAAAGTGGTCCTGGGGGTGATAATTCCAAGAGTCAGCTCCAGACGCTGCTCACCAGAGCAGGATATGCTGCACCTACTTACAAGACAAAGCAATTGAAAAACAATCAGTTCCGATCCACTGTAGAGTTCAACGGAATGCAGATCATGGGGCAGCCTTGTAACAACAAGAAGTTTGCAGAAAAGGATGCGGCAGCGGAGGCTCTGCAGTTGCTAATGGGTGGGACCCAGTCAGGCCACGAATATATTGACCACATGTCAATGTTGCTGAAGAAGAGCAAGAAGGATCATAAGTAA 3546 43.49 MKDRPPPSCVSRYIPPHHRLRSAVTSSASPNLNAASLDSTSRDHQGTLLNPRNTSLPHSQPQKLQQKDNSLYDFLYEEVSEEGSDREIESSSHGVSLIHLLVCEFGGASAPDTIDEWKWKFTMLLRNKDKQELVSREKKDRRDFEQIAILASRMGLYSHLYVKVVVFSKVPLPNYRFDLDDRRPQREVILPLGLDRRVEAHLEEYLSQKFTTNENFQDIAFSRSSSTSSIATDEGLFEQPEPLAVSRSVIEKIVWRRSLQLRNQQQAWQESTEGRKMLEFRGSLPASKEKDALLTAISGNQVVIVSGETGCGKTTQIPQFILESEIESVRGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGKDTCLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPVVHIPGFTYPIRTYFLENILEMTGYRLTPYNQVDDYGQEKMWKMNKQAPRKRKSQLAPVVEDALRATDFKDYSPQTQESLSCWNPDCIGFNLIENLLCHICENECPGAVLVFMTGWDDISSLKDKLQAHPILGDSDQVLLLTCHGSMASAEQRLIFDEPRDGVRKIVLATNIAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGKCYHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENENLTVLGRHLTMLPMEPKLGKMLILGAVFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKAQFSHDYSDHLALVRAYEGWKDAEKDQIGYEYCWKNFLSAQSMKAIDSLRKEFFSLLKDTDLVDGNMATYNAWSYDEHLIRAVICCGLYPGICSVVQNEKSFSLKTMEDGQVLLHSNSVNARECKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGDILRGDGDGHLKMLGGYLEFFMKPAIAEMYQSLRRELDELIQNKLLNPRMGIHMYHELLSAVRLLISEDQCDGRFVFSHQVGRQVVKPSKTSVTVMPKALVSRTESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRSTVEFNGMQIMGQPCNNKKFAEKDAAAEALQLLMGGTQSGHEYIDHMSMLLKKSKKDHK* 1182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3945265 3976762 + Vvi1g379 Vvi1g379 769579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g379 1181 MobiDBLite consensus disorder prediction 1 67 - -
Vvi1g379 1181 Pfam DEAD/DEAH box helicase 294 444 IPR011545 GO:0003676|GO:0005524
Vvi1g379 1181 PANTHER ATP-DEPENDENT RNA HELICASE 60 1106 - -
Vvi1g379 1181 Gene3D - 1069 1159 - -
Vvi1g379 1181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 857 IPR027417 -
Vvi1g379 1181 SMART ultradead3 282 470 IPR014001 -
Vvi1g379 1181 SMART ha2_5 744 834 IPR007502 GO:0004386
Vvi1g379 1181 Gene3D - 543 700 IPR027417 -
Vvi1g379 1181 MobiDBLite consensus disorder prediction 22 67 - -
Vvi1g379 1181 SMART DRBM_3 1093 1156 IPR014720 -
Vvi1g379 1181 Pfam Helicase associated domain (HA2) 745 825 IPR007502 GO:0004386
Vvi1g379 1181 CDD SF2_C_RHA 528 690 - -
Vvi1g379 1181 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 60 1106 - -
Vvi1g379 1181 Pfam Helicase conserved C-terminal domain 551 681 IPR001650 -
Vvi1g379 1181 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 900 982 IPR011709 -
Vvi1g379 1181 SUPERFAMILY dsRNA-binding domain-like 1086 1155 - -
Vvi1g379 1181 Pfam Double-stranded RNA binding motif 1093 1155 IPR014720 -
Vvi1g379 1181 SMART helicmild6 576 682 IPR001650 -
Vvi1g379 1181 CDD DEXHc_RHA-like 300 460 - -
Vvi1g379 1181 Gene3D - 246 462 IPR027417 -
Vvi1g379 1181 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 722 IPR001650 -
Vvi1g379 1181 Gene3D - 724 832 - -
Vvi1g379 1181 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1092 1157 IPR014720 -
Vvi1g379 1181 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 461 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g379 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - vvi:100264518 2286.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g379 Vvi17g260 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70