Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g38 ATGGATCCAACAAGTGGGAGTGTGGATAGGAAAAGAAATGTCTTGTTAAAAAGGAAATTGAAAAAGGTGGTCCTTTTTTATAATAGTGGATTTCATTGCTGTTGTCTTCAACTTCAGTTTTCATTTCCCATTCTCTCAGAAAACATCAACGTCTTCAGTTATTCTACAGATTTTGGTGGGATGAGAGTTTTTGGGGCGAGTCTGTTGGCCATTTTGTGGGCTCTTGCCTGCATTGAAGGGGCAATATCACATGGGGATCAGCCTCTCGCTAAGATTGCTATTCACAATGCAAAATTTGCTCTTCATGATCAAGCTTATGTCAAAGCCTCTCCTACAGTTCTTGGATTGGGGGGACAAAATACAGAATTTGTGACTGTAGAGTTTAGCTCCCCAAGCCCATCAGTTGATGATTGGATTGGGGTATTTTCTCCTGCCAATTTCAGTGCTTCAACCTGTCTTCCAGAAGATATCCGGGTTACTCCTCCACTATTGTGTTCTGCGCCTATTAAGTATCAGTATGCAAATTACACCAGTCCTAACTACAAAAATACAGGGAAAGGATCATTGAAGCTTCAATTGATCAACCAGAGATCAGACTTCTCTTTTGCACTATTTTCTGGCGGATTAGTAAATCCGAAGCTGGTGGCAGTGTCAAATTCTGTAGCTTTTGCAAATCCTAATGCACCAGTTTACCCTCGTCTGGCACAAGGAAAAGTATGGAATGAGATGACTGTAACATGGACGAGTGGATACGGGATCAATGATGCAGCACCTTTCATTGAATGGGGTCTGAAAGGAGGAGACAAGGTGCGTTCCCCAGCTGGGACACTGACTTTTGATCGTAGGAGCATGTGTGGAGCACCAGCAAGCACAGTTGGTTGGCGTGATCCTGGATACATACATACTAGTTTCTTGAAGGAGTTGTGGCCGAACTTAGTGTATAGCTACAAGCTGGGGCATAGATTGTTCAATGGTACATATATTTGGAGTCAACAATACCAGTTTAGGGCTTCTCCTTATCCTGGTCAAAACTCTTTACAACGTGTTGTCATTTTTGGTGACATGGGAAAGGATGAGGCTGATGGTTCTAATGAATACAACCAATATCAGCGTGGCTCTCTTAACACTACTAAGCAGCTTATTGAAGATTTGAAGAACATTGATATTGTCTTCCACATTGGAGATATATGTTATGCAAATGGATACCTTTCACAGTGGGATCAATTTACTGCACAGGTTGAGTCAATTACCTCAACAGTGCCATACATGATTGCAAGTGGCAACCATGAGCGGGACTGGCCTGGAACAGGATCCTTCTATGGAAACCTGGATTCTGGAGGAGAATGTGGTGTGCTGGCTGAGACTATGTTCTATGTGCCTGCTGAGAACAGGGCTAAATTCTGGTACTCCACTGATTTTGGCATGTTCCGGTTCTGCATAGCTGACACAGAACATGATTGGAGAGAGGGAACAGAGCAATACAGGTTCATTGAGCACTGTCTAGCCTCTGTTGATAGACAGAAGCAACCATGGTTGATCTTTCTTGCACATCGTGTTCTTGGTTATTCTTCTTCCTCCTTTTATGCTGAAGAGGGATCCTTTGCTGAACCAATGGGAAGGGACGACCTTCAAAAACTTTGGCAGAAGTACAAGGTTGACATTGCCATGTATGGTCATGTGCACAATTATGAAAGGACTTGTCCCATTTATCAGAATATTTGCACTAATGAAGAGAAGCACTATTACAAGGGCACCTTGAATGGAACAATACATGTGGTTGCTGGTGGGGGAGGAGCAAGCCTTGCAGATTTCACCACCATCAACACCAAGTGGAGCATCTTCAAAGACTATGATTATGGGTTTGTAAAACTTACAGCATTTGATCATTCAAACCTGTTGTTTGAATACAAGAAGAGCAGGGATGGCAAGGTTTATGACTCTTTCAGAATATCCAGGGGTTACAGAGACATCTTGGCCTGCACTGTGGATAGCTGCCCAAGCAGCACCTTGGCATCTTGA 2019 43.14 MDPTSGSVDRKRNVLLKRKLKKVVLFYNSGFHCCCLQLQFSFPILSENINVFSYSTDFGGMRVFGASLLAILWALACIEGAISHGDQPLAKIAIHNAKFALHDQAYVKASPTVLGLGGQNTEFVTVEFSSPSPSVDDWIGVFSPANFSASTCLPEDIRVTPPLLCSAPIKYQYANYTSPNYKNTGKGSLKLQLINQRSDFSFALFSGGLVNPKLVAVSNSVAFANPNAPVYPRLAQGKVWNEMTVTWTSGYGINDAAPFIEWGLKGGDKVRSPAGTLTFDRRSMCGAPASTVGWRDPGYIHTSFLKELWPNLVYSYKLGHRLFNGTYIWSQQYQFRASPYPGQNSLQRVVIFGDMGKDEADGSNEYNQYQRGSLNTTKQLIEDLKNIDIVFHIGDICYANGYLSQWDQFTAQVESITSTVPYMIASGNHERDWPGTGSFYGNLDSGGECGVLAETMFYVPAENRAKFWYSTDFGMFRFCIADTEHDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSSSFYAEEGSFAEPMGRDDLQKLWQKYKVDIAMYGHVHNYERTCPIYQNICTNEEKHYYKGTLNGTIHVVAGGGGASLADFTTINTKWSIFKDYDYGFVKLTAFDHSNLLFEYKKSRDGKVYDSFRISRGYRDILACTVDSCPSSTLAS* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 464305 474910 - Vvi1g38 Vvi1g38 769238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g38 672 PANTHER PURPLE ACID PHOSPHATASE-RELATED 67 671 - -
Vvi1g38 672 Pfam Fn3-like domain from Purple Acid Phosphatase 107 225 IPR040974 -
Vvi1g38 672 CDD MPP_PAPs 347 652 IPR041792 -
Vvi1g38 672 Pfam Calcineurin-like phosphoesterase 348 563 IPR004843 GO:0016787
Vvi1g38 672 Gene3D - 342 655 IPR029052 -
Vvi1g38 672 Pfam Iron/zinc purple acid phosphatase-like protein C 588 647 IPR025733 -
Vvi1g38 672 Pfam Purple acid Phosphatase, N-terminal domain 235 336 IPR015914 GO:0003993|GO:0046872
Vvi1g38 672 Gene3D - 228 341 - -
Vvi1g38 672 SUPERFAMILY Metallo-dependent phosphatases 347 654 IPR029052 -
Vvi1g38 672 PANTHER PURPLE ACID PHOSPHATASE 67 671 - -
Vvi1g38 672 SUPERFAMILY Purple acid phosphatase, N-terminal domain 207 339 IPR008963 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g38 K22390 ACP7; acid phosphatase type 7 - vvi:100252537 1279.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g38 Blo01g00453 . Bda01g02128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0528 Cone9ag0540 . . . . . . . . . Bpe02g02315 Bma01g00122 . . . . . . . . . Cpe07g00088 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007198 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 4 1 37