Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g381 ATGACCCTCTGTCTGAGAGCTTCAAAAGCTTCGGCTACCATAAACCCTACCCGTTCTATCAAGGTACGCCTTCTCTTCCCATGTTCCTTCTCTTTTCATGATTCCACTTCAAACCATTCAGCTCCACCTTTCTCCGAAACCCATTTCCAGGACGTCATTTCCAAATCAATTCGTGAAAAACCCTCGAATTTTTCCAATTATTACTGGCTCTCCCACCAGTTTGGACCCGTAATTGTCGACCCCGACTTGTTTGTTCGCGTATTGAGTTCGTTTAGGACGAGCCCACGCATGGCTTTGCGGCTCTTCCGATGGGCGGAGAGCCAACCAGGGTTTCGCCGGTCGGAGTTTGTGTTTTGCGCCATTCTTGAAATTCTTGCACAGAATAACTTGATGCGATCAGCCTACTGGGTGATGGAGAGAGTAATTAATGCAAACATGCATCGAATTGTGGACGTTTTGATTGGCGGGTGCGTGAGTTCGGAGGTTTCGGTTAAGATTCTCGATCTTTTGATATGGGTTTACTCTAAAAAATCCATGGTGGAGCAGTGTTTGTCGGTTTTTGATAAAATGATAAAAAGTAGGTTGTCTCCGGATGTCAAGAATTGTAATAGAATACTTAGGATACTTAGAGATAAAGATCTTATGAGCAAAGCTGTAGAAGTTTATAGAACAATGGGTGAGTTTGGGATTAAGCCCACTATTGTTACATACAATACTTTGTTGGATTCGTATTGCAAGGGAGGGAAAGTGCAGCAAGGACTAGATCTATTATCAGAGATGCAAAGAAGAGGGTGTGCTCCAAATGATGTTACTTATAATGTGTTGATAAATGGGTTGTCAAAAAAAGGGGAATTTGAGCAGGCCAAGGGATTGATTGGAGAGATGTTAAAAACAGGGTTGAAGGTTTCAGCTTATACTTATAACCCTTTGATTTATGGATATTTTAACAAGGGAATGCTGGCTGAGGCTTTGAGCCTTCAGGAAGAGATGGTGCTTAAAGGAGCTTCTCCTACAGTGGCAACTTATAATTCATTTATATATGGGCTTTGCAAGTTGGGAAGAATGAGTGATGCTATGCAACAGTTGTCTGACATGTTGGCAAATAATTTGTTGCCAGATGTGGTTTCATACAACACTCTTATTTATGGGTATTGTAGGTTGGGCAACTTGATGAAAGCCTTTCTGTTATTTGATGAGTTAAGGAGTATATATCTCTTTCCTACTATTGTTACCTATAATACCCTTTTAGATGGTCTTTGTAGGCAGGGGGAGTTGGAGGTTGCACAGCAGCTCAAAGTAGAAATGATCAATGAAGGGATAGCCCCTGATATTGTTACTTACACTATTTTAGTAAATGGGTCTTGCAAGATGGGGAGTTTATCGATGGCTCAGGAATTCTTCGATGAGATGTTGCATGAAGGGCTGGAGTTGGACTCCTATGCATATGCAACTCGAATAGTGGGTGAACTGAAGCTTGGTGACACATCCAGGGCATTTAGTCTGCAAGAAGAAATGCTAGCAAAGGGTTTCCCACCTGATTTGATCATCTATAACGTTGTTGTGGATGGACTTTGTAAATTGGGCAATTTGGAAGAAGCATCTGAACTGTTGCAAAAGATGGTTAGTGATGGTGTAATTCCAGATTATGTAACATATACTAGCATCATTCATGCACACTTGGAAAATGGTCGTCTCAGGAAAGGCAGAGAGATCTTCTATGAGATGCTGAGCAAAGGCCTAACACCTTCAGTTGTGACATACACAGTATTGATTCATGGACATGCTGGTAAAGGGAGGCTCGAACGGGCATTTATATATTTCTCAGAAATGCAGGAGAAGGGTATTCTGCCAAATGTGATCACCTATAATTCTCTGATAAATGGTCTTTGCAAAGTAAGGAGAATGGATCAGGCCTACAATTTTTTTGCTGAGATGGTAGAAAAGGGAATATTCCCTAATAAGTATAGCTACACCATCCTGATAAATGAGAACTGCAACATGGGCAATTGGCAAGAAGCTTTAAGTTTGTATAAACAAATGCTAGATAGAGGAGTTCAGCCTGACTCTTGTACACATAGTGCACTACTGAAGCAACTAGGCAAAGACTGTAAACTGCAAGCAGTACATGGAACTTCTACTATGCCCACAGCTAAGGTTGATCTACTGAGCCAAACAGTAGGAGCAGCAACGGCATTGACTTCAGTTTCTTCCATAGCTGAAAATGGCCATATAACCAAAGAGCAGCTCCGCCAAAATATTCCAACAAAGAAGCAGTTTGTTGATCCATACCGTCAGGGGCTGATTGTCGAAGGGGGTGTCGGATACAGCCAGACAGTGGTTATTCGTTCATATGAAGTTGGACCTGACAAAACTGCAACATTAGAGAGCATCCTTAATCTTTTGCAGGAAACGGCATTGAATCACGTTTGGATGTCGGGACTGCTTGGCAATGGATTCGGGGCTACACATGGAATGATGAGGAACAATCTCATATGGGTTGTCTCAAGAATGCAGGTTCAACTTGATCACTATCCAATCTGGGGAGAAGTAGTAGAAATTGACACATGGGTTGGAGCATCAGGGAAGAATGGAATGCGAAGAGACTGGCTAATTCGAAGTCATGCCACAGGCCAGATTTTTGCAAGAGCAACCAGTACTTGGGTGATGATGAACCAGCAAACCAGGCGCCTTTCAAAAATGCCAGAAGAGGTGAGGGCTGAGATTTCACCCTGGTTTATTGAGAAGCAAGCAATCAAAGAAGATGTCCCTGAAAAAATTGTTAAGTTGGATGATAAAGCAAAATATGTGAACTCCAACTTGAAGCCCAAGAGGAGCGATCTGGATATGAACCACCACGTGAACAATGTGAAGTACGTAAGATGGATGCTTGAGACCATCCCTGATCAATTTTTGGAGAGCCACCAACTGTCCAGCATCATACTAGAATATAGAAGAGAATGTGGAAGTTCAGACATTGTTCAATCCCTATGTGAACCAGATGAGGCTGCAATTCTCAAAGAGGGAGGTCAACAACAACCAAATGAGATCAAATTGCTAAATGGGTTTCCAATGGCATCAGAAATTCTTGATGGCCATGGTCTGCTGAATGGGTCCTTTCACAAGGGGACATTAGGATATACACATGTCCTCCAGACTAAAGGGGGCCGCAAATATGAAGAGATCGTCAGAGGGAGGACAAAATGGAGGACAAAACACTCTGCCATATCCTTTACTTAA 3237 42.32 MTLCLRASKASATINPTRSIKVRLLFPCSFSFHDSTSNHSAPPFSETHFQDVISKSIREKPSNFSNYYWLSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATALTSVSSIAENGHITKEQLRQNIPTKKQFVDPYRQGLIVEGGVGYSQTVVIRSYEVGPDKTATLESILNLLQETALNHVWMSGLLGNGFGATHGMMRNNLIWVVSRMQVQLDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSHATGQIFARATSTWVMMNQQTRRLSKMPEEVRAEISPWFIEKQAIKEDVPEKIVKLDDKAKYVNSNLKPKRSDLDMNHHVNNVKYVRWMLETIPDQFLESHQLSSIILEYRRECGSSDIVQSLCEPDEAAILKEGGQQQPNEIKLLNGFPMASEILDGHGLLNGSFHKGTLGYTHVLQTKGGRKYEEIVRGRTKWRTKHSAISFT* 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3994676 4002209 - Vvi1g381 Vvi1g381 769581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 386 489 IPR011990 GO:0005515
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 490 598 IPR011990 GO:0005515
Vvi1g381 1078 Pfam PPR repeat 299 331 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat 508 541 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 599 763 IPR011990 GO:0005515
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vvi1g381 1078 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 91 709 - -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 516 548 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 620 653 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 174 199 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 655 689 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 585 619 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 375 401 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Vvi1g381 1078 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Vvi1g381 1078 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 938 1001 IPR029069 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vvi1g381 1078 Pfam Acyl-ACP thioesterase 775 1053 IPR002864 GO:0006633|GO:0016790
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Vvi1g381 1078 Gene3D Hotdog Thioesterase 767 1076 - -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi1g381 1078 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 774 921 IPR029069 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Vvi1g381 1078 CDD 4HBT 775 891 - -
Vvi1g381 1078 PANTHER OS12G0152600 PROTEIN 91 709 - -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat family 547 595 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat family 617 666 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat family 337 386 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat family 407 456 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat family 232 281 IPR002885 -
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi1g381 1078 Pfam PPR repeat 170 194 IPR002885 -
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 297 370 IPR011990 GO:0005515
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 227 296 IPR011990 GO:0005515
Vvi1g381 1078 Gene3D Tetratricopeptide repeat domain 79 226 IPR011990 GO:0005515
Vvi1g381 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g381 - - - vri:117912497 1404.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008529 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 35