Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g382 ATGAAAGGGCGAGAAAATCCAGCAGAGGATGCCTTAATTCTTCTCAGAAGTAGAATTTGTAACCCTAATTTCGTCTTCACACCATTTTCCGATTCACCCGACAGCAATTACAGCAAGTTGAAATTCATTATATCAAGCTCAGTGACCGAGGCATGTAACAATTCAATCCTTCTTCTTGGTCCTCGTGGTTCTGGAAAAACGGCGGTGTTGGAGCTTGTTATCAGAGATCTATTGGCAGAACATGCTGATATGATATCAGTGATCAGATTGAATGGGCTTTTGCACAGTGATGACAATTGTGCAGTCAAGGAAATTGCTAGACAATTGTGTGTGGAGCATCAGTTGTTGTTCTCAAAAATGGCATCATTTGACGATAATTCCCAGTTCATGATAGCTATGTTACGGGAGTGTGGATTAGCTCACAAGACAATCATTTTTGTATTGGATGAGTTTGACTTCTTCACTCAGGCAAGATTACCTCTCTCTCATGGGAAACAACGATTACTTTATAGCTTGTTGGATGCAATGCAATCTGTGACGTCACAAGCAGTTGTCATTGGTGTCAGTTGCAGACTAGATGCAGATCAACTCTTGGAAAAAAGAGTAAGATCTCGTTTTTCACATAGAAAGGTGTTGTTTCTTCCACCCTCAAAGGAAGATCTACAAAGATTGTTAGAGCACATTTTTTCTTTGCCAGTAGACACGAGCCTTCCAAATGACTATGCTGTTGAGTTCAATATGAAACTCCATCATATATTGGCAGATGAGAGATTTAAAGAAATCATTAATACCTTGTTGAATTCTGATTCCACTGTCAAACATTTGTTGAGGTTTCTATTTTATGCTGTTTGTCATATGGATTTGGAATCTGGGTTCCTGTCACTTGATAACTTCAGAACAGCAATGTCAAGCATCCAAAGGCAGCCAAAGATGGAATATTTACAAGCAGATTGCTCCATTTTGGAACTCTATATTTTGGTGTGCATGAAGAGGTTGGAAGTCAAAGAGCAAAACTCATACAATTTCAATTCTGTAATGAAAGAATACAAAGGCATACATGATGCATACCAGACATCCGATTATTATGCACGGAATGTATGCTTACGGGCTTTTGAACACCTTGTACAACGTGAATTAATCTGTTTTATGGATAATAGGGGAAACAATCAATCTATAGAATTTCGTGCAGTGAAGCTACTAATCTCATCACATGAACTCTATCAGGGATTGAAATCATATCGCTCTTGTCCTGTAAGTTCCTACAAAAATAGTGTGTGA 1278 38.5 MKGRENPAEDALILLRSRICNPNFVFTPFSDSPDSNYSKLKFIISSSVTEACNNSILLLGPRGSGKTAVLELVIRDLLAEHADMISVIRLNGLLHSDDNCAVKEIARQLCVEHQLLFSKMASFDDNSQFMIAMLRECGLAHKTIIFVLDEFDFFTQARLPLSHGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKVLFLPPSKEDLQRLLEHIFSLPVDTSLPNDYAVEFNMKLHHILADERFKEIINTLLNSDSTVKHLLRFLFYAVCHMDLESGFLSLDNFRTAMSSIQRQPKMEYLQADCSILELYILVCMKRLEVKEQNSYNFNSVMKEYKGIHDAYQTSDYYARNVCLRAFEHLVQRELICFMDNRGNNQSIEFRAVKLLISSHELYQGLKSYRSCPVSSYKNSV* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4004381 4010867 - Vvi1g382 Vvi1g382 769582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g382 425 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 5 419 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vvi1g382 425 Gene3D - 34 215 IPR027417 -
Vvi1g382 425 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 227 408 IPR032705 -
Vvi1g382 425 Pfam ATPase family associated with various cellular activities (AAA) 56 209 IPR003959 GO:0005524|GO:0016887
Vvi1g382 425 SMART AAA_5 52 216 IPR003593 -
Vvi1g382 425 CDD AAA 54 212 - -
Vvi1g382 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 270 IPR027417 -
Vvi1g382 425 PIRSF ORC4 5 422 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g382 K02606 - vvi:100249124 802.357