Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g384 ATGAGTAGAGCCAAGAGAGAGCAGCTGAGTCGAACTCTGAATTCCCACCTCAACAACATCCACGAGACCTTCCAGGTTTTGGATCAAACATCTTCACTTCCTCTTGACAAAGTCAGTTGGGATGACGTTATACAGATGGGAGAGCAAGTCTACAAACAAGCTACTATTGTTGGAATGCTTTGGACCGGGGAAGCACCTGAAGTTTCAGCACTGGAAGGGAATATGGAAGCATACTTCAATATGCTACAGGGTTTCCTTTTTCTCTCCCATGGAAGTACAGTGGGTGCAGGACCTACTCTTTCTTCCAGTATTCATGCATCGGTGAAGCAAGTTGTGGATTCTAGTTTTCGGTTATTGAAAGAGTCTGTCTCTTCCTATGGATCCCGCAACAGAGACCAGAAACTCTCAATCCCACAGTTAGTGGGTGCGGTTTGGGAGGCCTGTTCTGCTCTTAAGAAGACTCCTGCCACAAATATCACAGCCATTGGACGAACAATGACACAGGTTGCAGTTTCCATGAAGGATGTCCTTCGCGAGATGAAGGAGCTGAAGCCAGCTTCCTCAGACCCAACTGATGAAACTTCTGATGAGGCTTCCAACAAAGCAGAAAGCATACCTGAAAATGATGATAATTCAAGTGAAGGTGATCTTGGCAATGACCTGTCGCCTGAGGAAATGAAAATTGCAGTATCAGTGATATCAGTTGTCACTGAAATTCTTGCAGTCATAAAGGAGCTTATCCGCTGCATTACAGGCTTGGTTAAACAGGAAGATGCAAACAAGAGTAGTAATTTTGTGGATTCGTTGGAGAAGTTATTGAAGCTCTGCCAAGGAATTGGTGTACAGGTTGATGAGCTCGGTGCTTGTCTTTACCCCCCACAAGAGATTCCTGCCATGAAGGCCGCCGCAGAGAAAATATCTGGCAGTGTTGATGAAATACAGGCAGAGATAGAAAATCTTGGAGGCACCACAGAAACCTTCATTCAGGCATGCAATGTTTTGAGGAGCTCTCTGGGACAGCTAAATTCCCTAGTGGGTGATTCCAGTACTGCTGATCTTGTACCTGAAATGCAGAATCTTGCTGTGACAAGTTAA 1095 45.21 MSRAKREQLSRTLNSHLNNIHETFQVLDQTSSLPLDKVSWDDVIQMGEQVYKQATIVGMLWTGEAPEVSALEGNMEAYFNMLQGFLFLSHGSTVGAGPTLSSSIHASVKQVVDSSFRLLKESVSSYGSRNRDQKLSIPQLVGAVWEACSALKKTPATNITAIGRTMTQVAVSMKDVLREMKELKPASSDPTDETSDEASNKAESIPENDDNSSEGDLGNDLSPEEMKIAVSVISVVTEILAVIKELIRCITGLVKQEDANKSSNFVDSLEKLLKLCQGIGVQVDELGACLYPPQEIPAMKAAAEKISGSVDEIQAEIENLGGTTETFIQACNVLRSSLGQLNSLVGDSSTADLVPEMQNLAVTS* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4016640 4021214 - Vvi1g384 Vvi1g384 769584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g384 364 MobiDBLite consensus disorder prediction 182 208 - -
Vvi1g384 364 Gene3D Talin, central domain 2 151 - -
Vvi1g384 364 Gene3D I/LWEQ domain 154 344 - -
Vvi1g384 364 MobiDBLite consensus disorder prediction 182 220 - -
Vvi1g384 364 Pfam Grap2 and cyclin-D-interacting 42 314 - -
Vvi1g384 364 PANTHER CYCLIN D1-BINDING PROTEIN 1 3 350 IPR026907 GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g384 K21626 CCNDBP1, DIP1, GCIP; cyclin-D1-binding protein 1 - vvi:100243961 702.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g384 . . . . . . . . Cmo04g01548 . . Cma18g00987 Car04g01534 Car18g00908 Sed07g2128 Cpe09g00330 Cpe01g01318 Bhi07g01256 Tan04g0793 Cmetu10g0036 Lac13g0546 Hepe01g1151 . . . . . . . . . Cone13ag0790 . . . Lsi04g00209 Csa05g02658 Chy10g01190 Cme10g00214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012569 0 1 1 1 1 1 2 1 1 1 1 1 3 1 1 0 1 2 1 1 1 0 1 1 1 0 0 1 1 1 29