Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g387 ATGGTTGCTGTGGTTCTATCGCAATACTTGGTACAAGTTGTATCTGTAATGATGGTTGGACACCTGGGTGAGCTTGCTCTCTCCAGCACCGCCATAGCCATCTCTCTCTCCGGCGTCAGTGGCTTTAGTCTTCTTCTAGGAATGGCTAGTGCATTGGAGACTCTATGTGGGCAAGCTTATGGAGCAAAACAATATAGCAAGCTAGGAACTCAAACTTACACTGCCATTTTCTCGCTTTTCTTGGTTTGTCTTCCACTCTCTGTCATATGGATCTACATGGGAAAACTGCTCACTTTCATGGGCCAAGACCCTTTGATTTCATATGAAGCTGGTAAATTCACAATGTGGCTTGTTCCTGCACTATTTGCTTATGCGACTCTTCAGCCACTTGTTCGGTACTTTCAAACACAAAGTTTGACCATGCCCATGCTCCTAAGTTCTTGTGCTGCTCTTTGTTTCCATATGCCTCTATGTTGGGTTTTGGTTTTCAAGTCAGGACTAGGTAACCTTGGAGCAGCACTGGCAATTAGCATTTCATATTGGTTGAATGCGATCTTCCTGGTATTGTACATGAAGTACTCTTCTGCTTGTGAGAAAACCCGTGTTCCAGTTTCTATGGAGGTGTTTCAAGGAATGGGAGAGTTTTTCCGCTTTGCTATCCCTTCTGCTGTAATGATTTGTCTAGAATGGTGGTCATTTGAACTGCTCATCTTGCTGTCCGGGCTTTTACCCAACCCTGAGCTTGAAACCTCTGTTCTTTCTGTATGTCTCAACACCATCTCAACACTCTATACGATACCATATGGACTAGGTGCTGCTGGAAGCACTAGAGTTTCAAATGAACTGGGAGCGGGGAACCCACAAAAGGCACGTTTAGCGGTCTATGCACTCATGTTTCTTGCAGTCACAGAGACAGCTTTAGTGAGCACAACCCTTTTTGCCAGTCGTCGTGTTTTTGGTTACTTGTTCAGCAACGAGAAGGAGGTCGTGGATTATGTCACAAACATGTCTCCTCTGGTTTGTCTGTCCGTCATATTGGACAGCATGCAAGGGGTTCTTTCTGGTGTTGCTAGGGGATGTGGGTGGCAGCATATAGGGGCTTTTATCAATCTTGGAGCCTTTTATCTTTGTGGCATCCCAGTAGCTGCCACATTGGCGTTCTGGTTACAGTTAAGAGGAAGAGGCCTCTGGATTGGAATACAAACTGGTGCTCTTTTACAAACAACTCTGCTCTGCGTTATGACTGGTTTTACAAATTGGGAAAAACTGGCAACTAAAGCAAGGCAGCGAATATTTGAGGGAAGATATTCAGTTGAAGATAGACTGATGTGA 1332 44.82 MVAVVLSQYLVQVVSVMMVGHLGELALSSTAIAISLSGVSGFSLLLGMASALETLCGQAYGAKQYSKLGTQTYTAIFSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFAYATLQPLVRYFQTQSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLNAIFLVLYMKYSSACEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLLPNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVTETALVSTTLFASRRVFGYLFSNEKEVVDYVTNMSPLVCLSVILDSMQGVLSGVARGCGWQHIGAFINLGAFYLCGIPVAATLAFWLQLRGRGLWIGIQTGALLQTTLLCVMTGFTNWEKLATKARQRIFEGRYSVEDRLM* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4031775 4035661 - Vvi1g387 Vvi1g387 769587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g387 443 TIGRFAM matE: MATE efflux family protein 2 397 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g387 443 Pfam MatE 221 383 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g387 443 Pfam MatE 3 160 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g387 443 CDD MATE_eukaryotic 1 426 IPR045069 GO:0042910|GO:1990961
Vvi1g387 443 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 431 - -
Vvi1g387 443 PANTHER PROTEIN DETOXIFICATION 1 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g387 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100255994 839.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g387 Vvi17g255 ECH
Vvi1g387 Vvi14g833 ECH
Vvi1g387 Vvi14g834 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82