Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g388 ATGTTGCAGTACTGTTTACAAGTAATCTCCATCATGTTTGTAGGCCATCTTGGGGAGTTGCCACTCTCTGGTGCTTCCATGGCCACTTCATTTGCTTCAGTCACTGGTTTCAGCTTATTGTTAGGAATAGGAAGTGCATTGGAGACACTTTGTGGGCAAGCCTATGGAGCCAGAGAGTACCACATGGTGGGTATTCACACACAAAGAGCAATGCTAACCCTTCTTGTCTTGAGCATTCCCCTTGCATTTATATGGTTCTTCACGGCCCCTATTCTCATATCTCTGGGCCAAGATCGCCGCATATCTACAGAAGCAGGGATATTCAATAGGTGGATGATCCCAAGCCTTTTTGCCTACGGCCTCCTGCAATGTCTCAACAGATTTCTGCAGACACAAAACATTGTTTTCCCTATAATGATAAGCTCAGGGATCACAGCTGTTTCCCATATCCTCGTTTGTTGGCTTCTTGTCTTTAAATCTGGTCTTGGAAGCAAAGGAGCAGCCTTGGCAAACACCATCTCGAATTGGGTTAATGTATTTATGTTGGCAGTTTATGTGAAGTTTTCCCCTGTTTGCTCAAAAACTTGGACCGGGTTATCAAAACAAGCACTTCATGATATTCCCAACTTTTTGAAGCTTGCAGTACCTTCTGCTACTATGATCTGCTTTGAATATTGGACATTCGAGATGATTGTTCTCCTCTCTGGCCTTCTCCCAAATCCCAAACTAGAGGCATCTGTGTTATCGATAAGCCTTAACACATGTTGGATGGTCTACACAATCTCTGTTGGTCTTGGTGGAGCTATAAGTACAAGAGTTTCAAACGAACTAGGTGCCAAGCACCCACAACATGCACGCTTGGCAGTATGGGTAGTGATTATAATTTCCATATCAGAGGGTGTCGTGGTTGGAACCGCTACTATTTTGGTACGCCATGTCTGGGGAAAGCTATATAGCAATGAAGCAGAAGTTATCAGATATGTGGCTAAAATGATGCCACTTCTTGCATTATCTAACTTCTTGGATGGATTCCAATGTGTGCTTTCAGGGGCTGCTAGAGGATATGGATGGCAAAATATTTGCACAATTATCAACCTTGGAGCTTATTACATCGTGGGAATTCCTTGTTCTGTGCTATTTGCTTTTATATGCAATTTTGGAGGCATGGGGCTTTGGATGGGAATCATTTGTGGCCTTGGCATACAAGTGACAGCACTTGTTACCATGAATTTATGCACTAATTGGGATGAAGGTGTAGGGGCATCTCTCAGTGCCTGGGTTTTCCATCCAAGTTTGCATGATGAACCAATGAGAAGAGATGAAGAAAATGAAGAAGCAATTGTCCTAGATTATGGGCACCCATAG 1365 43.3 MLQYCLQVISIMFVGHLGELPLSGASMATSFASVTGFSLLLGIGSALETLCGQAYGAREYHMVGIHTQRAMLTLLVLSIPLAFIWFFTAPILISLGQDRRISTEAGIFNRWMIPSLFAYGLLQCLNRFLQTQNIVFPIMISSGITAVSHILVCWLLVFKSGLGSKGAALANTISNWVNVFMLAVYVKFSPVCSKTWTGLSKQALHDIPNFLKLAVPSATMICFEYWTFEMIVLLSGLLPNPKLEASVLSISLNTCWMVYTISVGLGGAISTRVSNELGAKHPQHARLAVWVVIIISISEGVVVGTATILVRHVWGKLYSNEAEVIRYVAKMMPLLALSNFLDGFQCVLSGAARGYGWQNICTIINLGAYYIVGIPCSVLFAFICNFGGMGLWMGIICGLGIQVTALVTMNLCTNWDEGVGASLSAWVFHPSLHDEPMRRDEENEEAIVLDYGHP* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4036758 4039540 + Vvi1g388 Vvi1g388 769588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g388 454 CDD MATE_eukaryotic 1 419 IPR045069 GO:0042910|GO:1990961
Vvi1g388 454 Pfam MatE 216 378 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g388 454 Pfam MatE 2 155 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g388 454 TIGRFAM matE: MATE efflux family protein 1 392 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g388 454 PANTHER PROTEIN DETOXIFICATION 1 424 - -
Vvi1g388 454 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g388 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100250856 902.894
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g388 Vvi14g833 ECH
Vvi1g388 Vvi17g255 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g388 . . . . . . . . . . . . . . . . . Bhi07g01251 . . Lac13g0551 Hepe01g1148 . . . . . . . . . . . . Cone9ag0440 . Csa05g02661 Chy10g00269 Cme10g00210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153