Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g389 ATGAGTGCTGTCAACATCACTAACGTAACCGTTTTGGATAATCCGGCGGCTTTTCTGAACCCTTTTCAATTTGAAATCTCTTACGAGTGCTTGATTCCCCTCAAAGATGATTTGGAATGGAAGCTCATTTATGTGGGGTCTGCTGAGGATGAGACTTATGACCAACTCTTGGAGAGTGTGCTTGTTGGGCCTGTCAATGTTGGCAACTATCGCTTTGTGTTTCAAGCAGACCCTCCAGACCCGTCAAAAATTCGTGAAGAGGATATTATTGGTGTCACAGTACTGCTATTAACATGTTCTTATCTGGGTCAGGAATTTATCCGAGTGGGATATTATGTCAACAATGATTATGACGATGAACAGCTAAGAGAAGAGCCTCCCCAAAAGGTGTTGATTGATAGGGTTCAAAGAAATATTTTGGCTGACAAGCCCAGAGTAACGAAATTTCCTATCAACTTTCATCCTGAGAACAATGAGCATGGGGAACAGCCCCCTCCTTCACCTGAAATCAATGAGAATGGAGAACAACCACCACCTTCACACCATGACCCTTCTGACTGA 561 43.32 MSAVNITNVTVLDNPAAFLNPFQFEISYECLIPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVFQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFIRVGYYVNNDYDDEQLREEPPQKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEQPPPSPEINENGEQPPPSHHDPSD* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4064494 4072882 - Vvi1g389 Vvi1g389 769589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g389 186 Pfam ASF1 like histone chaperone 1 153 IPR006818 GO:0005634|GO:0006325
Vvi1g389 186 Gene3D - 1 157 IPR036747 GO:0005634|GO:0006325
Vvi1g389 186 PANTHER HISTONE CHAPERONE ASF1B-RELATED 1 175 - -
Vvi1g389 186 MobiDBLite consensus disorder prediction 146 186 - -
Vvi1g389 186 SUPERFAMILY ASF1-like 1 153 IPR036747 GO:0005634|GO:0006325
Vvi1g389 186 PANTHER ANTI-SILENCING PROTEIN 1 1 175 IPR006818 GO:0005634|GO:0006325
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g389 K10753 ASF1; histone chaperone ASF1 - vvi:100266239 364.385
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g389 Vvi14g827 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02047 . . . . . . . . . . . Cmo04g02189 . Cma04g02087 . Car04g02026 . . . Bhi12g00866 . . . Hepe02g2678 . Lcy10g1456 Cla01g00588 Cam01g0614 Cec01g0605 Cco01g0630 Clacu01g0606 Cmu01g0579 Cre09g1926 Lsi09g00637 . Chy09g00877 Cme09g01410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002121 2 3 2 3 1 2 3 2 2 2 2 2 3 2 2 3 2 3 0 2 2 1 2 2 2 2 2 4 2 2 64