Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g39 ATGTGGAGAAGGGCCGTGGCAGTGAGGTTTGCTCCACAGAGGCGCTTCTCCTCCACATCCGAATCCGAATTCCCAACCCTCTACTCCTTCCTCCAACCATCACTTTTTTCTCTCAAACCAATCCCTTCAGCACCACGGTCACCACACCCAACATCTCCTAAACCCCTCCAGAGCCCTGCCCCAGAGGACCTAGAATCCGCACTCCACACATCCCTCTCTACCAACAACACTGATGAAGCTTGGAAGTCTTTCAAGGCTCTCACTACCAATTCCACCTTCCCAAGTAAGTCCCTCGCCAACTCCCTCATTGCCCACCTGGCTTCTCTCCATGACCTCTATAATCTCAAGAGGGCTTTTGCTTCTGCTGTATTTTTGCTGGAGAAAAACCCCAGTTTGTTGGATTTTGGGACTGTTCGAACCCTTTTGGGTTCCATGAATTCTGCTAATACCGCTGCTCCTGCTTTTGCTTTGATCAATTGTATGTTCAAGAATAGGTATTTCATGCCTTTCTCTATGTGGGGTGGTGTTATTGTTGAGATTACGCGAAGGAATCGTAGCTTTGTTGCGTTTTTACGTGTTTTTAATGAGACTTGTAGGATTGCAATTGATGAGAAGTTGGAATCTATGAAACCTGACTTGGATGCCTGCAATGTGGCGTTGGAGGGGTGCAGTCAGGATCTTGAATCTGTGAGCGAGGCTGAGAAGGTTGTGGAGATGATGTCGGTTTTGGGTATCCAGCCTGATGAATCAAGTTTTGGGTTTCTTGCTTATTTGTATGCATTGAAGGGTCTTGAAGAAAAGATAGTTGAGTTAGAAGGTTTGATGCGTGGGTTTGGTTTTTCAAGCAAAAAGGTAATTTACAGTTATCTGATTAATGCATATGTCAAGTCTGGCAATTTGGAATATGTGTCCAGGACCATTTTTCGGAGTTTGAGAGAAGACGATGAACAAGGTCCAAACTTTAGCGAAGAAACTTATTGTGAAGTGGTAAAAGGGTTTTTGCAAAATGGCAGTATTAAGGATTTAGCAAGTTTGATAATTGAAACTCAAAAGTTGGAGCCCTCATCAATTGCGGTTGATAGATCTATTGGATATGGTATTATTAGTGCTTGTGTTAGTCTTGGATTCTTAGATAAGGCACATAGTATTCTTGATGAAATGAATGTTCAGGGAGTTTCTGTTGGGCTTGGGGTCTATGTGTCAATACTGAAGGCCTTCTGCAAAGAGCATCGAACTGCTGAAGCTGCTCAATTGGTCACGGAAATCAGCAGTTTGGGCCTTCAGTTGGATGCTGGCAGTTATGATGCTTTGATTGAAGCATCAATGTCAAGCCAAGATTTTCAGTCGGCATTTTCTTTGTTTAGAGACATGAGGGAAGCAAGAGTACCTGATATGAAGGGGAGTTATCTCACGATGATGACAGGTTTAACAGAGAATCACCGGCCTGAATTAATGGCTGCCTTCTTAGATGAGATTGTTGAGGACCCGCGAGTTGAAGTGGGTACCCATGACTGGAATTCAATTATTCATGCCTTTTGTAAGGTTGGGCGATTAGAAGATGCAAGGAGGACTTTCAGAAGGATGATCTTTCTACAGTTTGAACCAAATGATCAAACCTATTTGTCCCTTATTAATGGATATGCAAGTGCAGAGAAATATTTTAGTGTTTTAATGCTGTGGAATGAGGTCAAGAGAAGGATTTCAATTGATGGAGAGAAGGGGGTCAAATTTGATCACAACTTGGTTGATGCATTCCTGTATGCTCTAGTTAAAGGGGGCTTTTTCGATGCCGTGATGCAGGTTGTGGAGAAATCTCAGGAGATGAAGATCTTTGTAGATAAGTGGAGGAAAGACACAGAAAAGAAAGGGCCCAGTGTTGAAAGTAAATCACCTCCACCGAAAAGAACACCTTTTCAAATTTCAATTGCTAGTTGTCCTGCATTATTGTACTTCCTATTTGTGTCCCTCAAACACCATCTCATCCCAAAACCTTCACCAATGTCATCTTCCTCAACTCCATGGCCTCTCATCCTCATTTTCTTCTCTCTCCCTCTAGTCCATTCCCGCTCCGACATTGTCCGAGCGATGCCACCCAATGGAACATGTAGTGATGTATGTGGCAATATCACTGTCAAGTTCCCATTTGGCACTGGATTTGGTTGCGGCCACCCCGACTTTGCTAGATACGTAAAATGTAGCTCTGGGACACTTCAATTCTCTACTCTCACTGGCATTTACACGGTTGCTTCAATTGACTACTCCAGCAGCACTATCATTGTCAATGACCCTCTTATGTCAACTTGCACTTCTATGCAGAACTCTGGAAGCTTTAGCTTGGACAGGGCCAGCCCATTCACTATAATGGCGGATGATGTATTTGTCTTGCTTGGTTGCTCCACAACCTCTCCAGTGTTTGATCTAAATGAAGATTTATGTGATACAGGTTCAGGTTCTCATGCATGCAGAGGGCTCTATTCTTGCAAAGGGGTGACTGGGATTGGCTTGGACCCCAATGCACCGACTTCTACTTGTTGTGTTTACAACTCCCTGGATGGGGTTGGGTCTGGTTATGGGCTGGATCTTCCAAAGCTACAATGCTCATCCTATGCATCGATATATGGGCTTGGCGATGATGAGGGGGACCCAATGAAATGGAAATTTGGGATTTCTTTGCAATATAATAGCTCAGATTCTGATGCTTGCAAGGATTGTGAAGCAAGTGGGGGCTTGTGTGGCTTCACTGGTTTGGATGAGTCATTTGCTTGTATTTGTCAGAATGGGGTGAACACCACCACCAACTGCTTTGGACGAGGGTATGCTTGGAGTGGAACATGGGGACCCAAAATTCAAACCAAGATGAGTATTGCAGGACTTCTGCTCTGGTGGATGGTGTTCTCTGTTTGA 2904 44.11 MWRRAVAVRFAPQRRFSSTSESEFPTLYSFLQPSLFSLKPIPSAPRSPHPTSPKPLQSPAPEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVALEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWRKDTEKKGPSVESKSPPPKRTPFQISIASCPALLYFLFVSLKHHLIPKPSPMSSSSTPWPLILIFFSLPLVHSRSDIVRAMPPNGTCSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSGTLQFSTLTGIYTVASIDYSSSTIIVNDPLMSTCTSMQNSGSFSLDRASPFTIMADDVFVLLGCSTTSPVFDLNEDLCDTGSGSHACRGLYSCKGVTGIGLDPNAPTSTCCVYNSLDGVGSGYGLDLPKLQCSSYASIYGLGDDEGDPMKWKFGISLQYNSSDSDACKDCEASGGLCGFTGLDESFACICQNGVNTTTNCFGRGYAWSGTWGPKIQTKMSIAGLLLWWMVFSV* 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 475547 481438 - Vvi1g39 Vvi1g39 769239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g39 967 Pfam Wall-associated receptor kinase C-terminal 888 926 IPR032872 -
Vvi1g39 967 Pfam PPR repeat 367 391 IPR002885 -
Vvi1g39 967 Pfam PPR repeat 285 301 IPR002885 -
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vvi1g39 967 Pfam PPR repeat family 505 548 IPR002885 -
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 365 482 IPR011990 GO:0005515
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 60 362 IPR011990 GO:0005515
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 497 641 IPR011990 GO:0005515
Vvi1g39 967 PANTHER BNAC05G43320D PROTEIN 1 965 - -
Vvi1g39 967 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g39 967 Pfam Wall-associated receptor kinase galacturonan-binding 702 762 IPR025287 GO:0030247
Vvi1g39 967 MobiDBLite consensus disorder prediction 43 57 - -
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Vvi1g39 967 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Vvi1g39 967 PANTHER OS01G0788900 PROTEIN 1 965 - -
Vvi1g39 967 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g39 - - - cic:CICLE_v10033305mg 1275.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g39 . . . . . . Bma14g01665 . . Cmo18g01126 . Cma18g01105 . Car18g01019 Sed06g1777 Cpe09g00221 . Bhi07g01488 Tan04g0995 Cmetu10g0618 Lac13g0378 Hepe10g1796 . . Cla05g02392 . . Cco05g2639 Clacu05g2566 Cmu05g2423 Cre05g2540 . . . Cone9ag0542 Lsi04g00362 Csa05g02513 Chy10g01058 Cme10g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011716 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 30