Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g39 ATGTGGAGAAGGGCCGTGGCAGTGAGGTTTGCTCCACAGAGGCGCTTCTCCTCCACATCCGAATCCGAATTCCCAACCCTCTACTCCTTCCTCCAACCATCACTTTTTTCTCTCAAACCAATCCCTTCAGCACCACGGTCACCACACCCAACATCTCCTAAACCCCTCCAGAGCCCTGCCCCAGAGGACCTAGAATCCGCACTCCACACATCCCTCTCTACCAACAACACTGATGAAGCTTGGAAGTCTTTCAAGGCTCTCACTACCAATTCCACCTTCCCAAGTAAGTCCCTCGCCAACTCCCTCATTGCCCACCTGGCTTCTCTCCATGACCTCTATAATCTCAAGAGGGCTTTTGCTTCTGCTGTATTTTTGCTGGAGAAAAACCCCAGTTTGTTGGATTTTGGGACTGTTCGAACCCTTTTGGGTTCCATGAATTCTGCTAATACCGCTGCTCCTGCTTTTGCTTTGATCAATTGTATGTTCAAGAATAGGTATTTCATGCCTTTCTCTATGTGGGGTGGTGTTATTGTTGAGATTACGCGAAGGAATCGTAGCTTTGTTGCGTTTTTACGTGTTTTTAATGAGACTTGTAGGATTGCAATTGATGAGAAGTTGGAATCTATGAAACCTGACTTGGATGCCTGCAATGTGGCGTTGGAGGGGTGCAGTCAGGATCTTGAATCTGTGAGCGAGGCTGAGAAGGTTGTGGAGATGATGTCGGTTTTGGGTATCCAGCCTGATGAATCAAGTTTTGGGTTTCTTGCTTATTTGTATGCATTGAAGGGTCTTGAAGAAAAGATAGTTGAGTTAGAAGGTTTGATGCGTGGGTTTGGTTTTTCAAGCAAAAAGGTAATTTACAGTTATCTGATTAATGCATATGTCAAGTCTGGCAATTTGGAATATGTGTCCAGGACCATTTTTCGGAGTTTGAGAGAAGACGATGAACAAGGTCCAAACTTTAGCGAAGAAACTTATTGTGAAGTGGTAAAAGGGTTTTTGCAAAATGGCAGTATTAAGGATTTAGCAAGTTTGATAATTGAAACTCAAAAGTTGGAGCCCTCATCAATTGCGGTTGATAGATCTATTGGATATGGTATTATTAGTGCTTGTGTTAGTCTTGGATTCTTAGATAAGGCACATAGTATTCTTGATGAAATGAATGTTCAGGGAGTTTCTGTTGGGCTTGGGGTCTATGTGTCAATACTGAAGGCCTTCTGCAAAGAGCATCGAACTGCTGAAGCTGCTCAATTGGTCACGGAAATCAGCAGTTTGGGCCTTCAGTTGGATGCTGGCAGTTATGATGCTTTGATTGAAGCATCAATGTCAAGCCAAGATTTTCAGTCGGCATTTTCTTTGTTTAGAGACATGAGGGAAGCAAGAGTACCTGATATGAAGGGGAGTTATCTCACGATGATGACAGGTTTAACAGAGAATCACCGGCCTGAATTAATGGCTGCCTTCTTAGATGAGATTGTTGAGGACCCGCGAGTTGAAGTGGGTACCCATGACTGGAATTCAATTATTCATGCCTTTTGTAAGGTTGGGCGATTAGAAGATGCAAGGAGGACTTTCAGAAGGATGATCTTTCTACAGTTTGAACCAAATGATCAAACCTATTTGTCCCTTATTAATGGATATGCAAGTGCAGAGAAATATTTTAGTGTTTTAATGCTGTGGAATGAGGTCAAGAGAAGGATTTCAATTGATGGAGAGAAGGGGGTCAAATTTGATCACAACTTGGTTGATGCATTCCTGTATGCTCTAGTTAAAGGGGGCTTTTTCGATGCCGTGATGCAGGTTGTGGAGAAATCTCAGGAGATGAAGATCTTTGTAGATAAGTGGAGGAAAGACACAGAAAAGAAAGGGCCCAGTGTTGAAAGTAAATCACCTCCACCGAAAAGAACACCTTTTCAAATTTCAATTGCTAGTTGTCCTGCATTATTGTACTTCCTATTTGTGTCCCTCAAACACCATCTCATCCCAAAACCTTCACCAATGTCATCTTCCTCAACTCCATGGCCTCTCATCCTCATTTTCTTCTCTCTCCCTCTAGTCCATTCCCGCTCCGACATTGTCCGAGCGATGCCACCCAATGGAACATGTAGTGATGTATGTGGCAATATCACTGTCAAGTTCCCATTTGGCACTGGATTTGGTTGCGGCCACCCCGACTTTGCTAGATACGTAAAATGTAGCTCTGGGACACTTCAATTCTCTACTCTCACTGGCATTTACACGGTTGCTTCAATTGACTACTCCAGCAGCACTATCATTGTCAATGACCCTCTTATGTCAACTTGCACTTCTATGCAGAACTCTGGAAGCTTTAGCTTGGACAGGGCCAGCCCATTCACTATAATGGCGGATGATGTATTTGTCTTGCTTGGTTGCTCCACAACCTCTCCAGTGTTTGATCTAAATGAAGATTTATGTGATACAGGTTCAGGTTCTCATGCATGCAGAGGGCTCTATTCTTGCAAAGGGGTGACTGGGATTGGCTTGGACCCCAATGCACCGACTTCTACTTGTTGTGTTTACAACTCCCTGGATGGGGTTGGGTCTGGTTATGGGCTGGATCTTCCAAAGCTACAATGCTCATCCTATGCATCGATATATGGGCTTGGCGATGATGAGGGGGACCCAATGAAATGGAAATTTGGGATTTCTTTGCAATATAATAGCTCAGATTCTGATGCTTGCAAGGATTGTGAAGCAAGTGGGGGCTTGTGTGGCTTCACTGGTTTGGATGAGTCATTTGCTTGTATTTGTCAGAATGGGGTGAACACCACCACCAACTGCTTTGGACGAGGGTATGCTTGGAGTGGAACATGGGGACCCAAAATTCAAACCAAGATGAGTATTGCAGGACTTCTGCTCTGGTGGATGGTGTTCTCTGTTTGA 2904 44.11 MWRRAVAVRFAPQRRFSSTSESEFPTLYSFLQPSLFSLKPIPSAPRSPHPTSPKPLQSPAPEDLESALHTSLSTNNTDEAWKSFKALTTNSTFPSKSLANSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALINCMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVALEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFGFSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSIKDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVYVSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMREARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMIFLQFEPNDQTYLSLINGYASAEKYFSVLMLWNEVKRRISIDGEKGVKFDHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKIFVDKWRKDTEKKGPSVESKSPPPKRTPFQISIASCPALLYFLFVSLKHHLIPKPSPMSSSSTPWPLILIFFSLPLVHSRSDIVRAMPPNGTCSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSGTLQFSTLTGIYTVASIDYSSSTIIVNDPLMSTCTSMQNSGSFSLDRASPFTIMADDVFVLLGCSTTSPVFDLNEDLCDTGSGSHACRGLYSCKGVTGIGLDPNAPTSTCCVYNSLDGVGSGYGLDLPKLQCSSYASIYGLGDDEGDPMKWKFGISLQYNSSDSDACKDCEASGGLCGFTGLDESFACICQNGVNTTTNCFGRGYAWSGTWGPKIQTKMSIAGLLLWWMVFSV* 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 475547 481438 - Vvi1g39 Vvi1g39 769239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g39 967 Pfam Wall-associated receptor kinase C-terminal 888 926 IPR032872 -
Vvi1g39 967 Pfam PPR repeat 367 391 IPR002885 -
Vvi1g39 967 Pfam PPR repeat 285 301 IPR002885 -
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vvi1g39 967 Pfam PPR repeat family 505 548 IPR002885 -
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 365 482 IPR011990 GO:0005515
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 60 362 IPR011990 GO:0005515
Vvi1g39 967 Gene3D Tetratricopeptide repeat domain 497 641 IPR011990 GO:0005515
Vvi1g39 967 PANTHER BNAC05G43320D PROTEIN 1 965 - -
Vvi1g39 967 MobiDBLite consensus disorder prediction 41 64 - -
Vvi1g39 967 Pfam Wall-associated receptor kinase galacturonan-binding 702 762 IPR025287 GO:0030247
Vvi1g39 967 MobiDBLite consensus disorder prediction 43 57 - -
Vvi1g39 967 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Vvi1g39 967 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Vvi1g39 967 PANTHER OS01G0788900 PROTEIN 1 965 - -
Vvi1g39 967 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g39 - - cic:CICLE_v10033305mg 1275.38