Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g393 ATGGCCGCGCCACCGTCGTCGTCGGCCACCGCTAGCATCATGCTCGCAATTTACGAGAAGAAGACCGTTACAGTCGAACTCTATCGCCCTCTCCGCCAGTACATCGCCTTTACCTACTCGGAGCGGGAAGCCCAAAATCTAGAAGATGATCTCCAGGCCCTCAAACAAATGCGCTCCGATCTTGAACCCCTGTGTCTTGTGGAGTCACGGTTCCCAATTTCGCCTGACAGGGACCACATCAACAGCATCACTTTCACGTGGTACGACGCCTTCAAGCAGAAGCAGAAGGCCTCTCAGCAGAACATCCACTTGGAGAAGGCTGCAGTTCTGTTCAATCTCGGCGCCGTCTACAGCCAGCTTGGGCTCTTCTACGATCGGTCATCGGTGGATGGTATGCGCCAGGCTGCGCAGGCGTTTATTGCTGCCGCCGGTGCGTTTGCCTTCTTGAGGGATAATGCGGCCATGAAGGCATCGATAGGGAGCTCCACGACGGTGGACGTTTCGGTGGAGTGTGCTGGGATGTTGGAGCGGCTGATGCTTGCTCAAGCTCAGGAGTGTGTGTTTGAGAATACTATTGCCAAAGGAAGTACGCCGATGGTCTGTACCAAGATTGCTAGGCAGGTTGGGCTTTACTATGAGGAAACTTTTGCCGCACTGAATGTTGCACCTCTGAATCAGCACTTTGACAAGACATGGATATCTCACATCCAGCTCAAGGCAGCCTTGTTTTATGGTGAGGCTTGCTATAGGTATGGTTTAGAGCTGCATCAGAAAGAAGAGATTGCAGAGGAAATTGCAAGGTTGAAGAGTGGGATAAGTGCTTTATCTGAGGCAAAGAAATCCTCAAAGGGAGCTGCTGCACAGATTTTGGATACAATTACAAAGTTAGAGACCAATCTTAATCGAAACTTAGAAAGGGCTGTGAAGGAGAATGATAGAGTGTACCTCATGAGGGTTCCTTCCCCCAGTACCCTACCACCTCTTCCAGCTTTTTCCATGGTTAAGTCGATGCCGATGAATGAGGTCCTGGATGCCAGCAAGGAGAGGATGTTTTCAAGTCTTGTTCCAGACAGCAGTGCAAAGGCTCTTTCAAGGTACACAGAAATGGTTGATGACATCATCAGAACACAAGCTGAAAAATTGCAACAAGGAAGTGAGCTAGCTCGAGTGAGGCTCAAGGAAATGGACCTGCCAGATTCTATTCTTGCTTTGGAAGGGAATTTCACTTTACCAACAGATCTTAAAGAAGATGTTGAGGCAGTGCAGATTTGTGGGGGCCCAGCAGGTTTGGAAGCTGAGTTGCAGCAACTTATGGATCTGAGGAGGGTGAACCAGGAACTGCTGGTTCAGACTGATGAGCTCTTGCAGAAGGAAGCAAGGGAAGATGGTCAGTTTAGAAGCCAATTTGGAACGCGGTGGACTAGGCCTCAGTCCAGCACTTTAACAAAGAATCTGCAGGACAGATTAAACAGATTTGCAGCAAACTTGAAGCAAGCTTCTGAAAGTGATGCAAGGATCGAGCGTTCAGTGAGAGAGCATATGGCACTCATGTCAATCCTTGATCGTCGTCCGATAGAATCAGCACTTCCAACCCTGGCTAGACCAATAATGTCTTTGGATGCCAATGAAGATGCTATAGTGGGGGCCCTGAAGCAAAGCTTGAGGCAATTGGAGACTCTTGGGGCACAACGGGCGGGTCTTGAAGACATGCTTAAAGAGATGAAAAGGAAGGATGATATACTGCCCAAGTTGATGACATCCACTGGCTCCTATGAAGACCTTTTCAGGAAGGAGATAGCAAAGTATGATAATATTTGTGAAGATATTGCCCAAAATCTTGAGGCACAAGAACAACTGTTGCTGCAAATACAGGCTCAAAATGATGAGTTTGCTGCAATCTTTAATCTTGAAGATTATAAAGCATCCCGTGAGAAGAGTTACAAGCAGATTGCAGCTGCCATAGCAAAGTTCCGAGAAATTAAGGAGAACATTAATGAGGGACTGAAGTTCTATGTGACTCTTCAGGATGCAATCACAAACATAAAGCAGCAGTGCAGCGATTTTGTGATGACCAGAAACATCCAGTGCCGAGAGATGATTGAAGATGTACAGAGACAAATGGCAGGTCTCAGTTTCCAGGATGGTAAGAACACTGGTGCTTACAACTACCCTTCTCCGCCACCTCCTGAGCAGCCGACAATGCCAGGATATGCTCACTCCCTCCCTCCTTATGGCTCTACACAGCAGCCACCACCTCCTTACCATGTTGCAGGTGGCCCATACCATCCCCAACAGGCCCAACAGCCACCACCTAGCCATGAGTATGGCCAACCTGCTTATCCAGGGTGGCGAGGTCCATACTATAATAATGCTCATGCACAGCAACCTGGATCTCTTCCTCGTCCTCCTTACACCATTCCAGCCCCTTATCCTCCTCACCACCAAAGCGGCTACTACAAGCAGCAATAG 2469 48.56 MAAPPSSSATASIMLAIYEKKTVTVELYRPLRQYIAFTYSEREAQNLEDDLQALKQMRSDLEPLCLVESRFPISPDRDHINSITFTWYDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQLGLFYDRSSVDGMRQAAQAFIAAAGAFAFLRDNAAMKASIGSSTTVDVSVECAGMLERLMLAQAQECVFENTIAKGSTPMVCTKIARQVGLYYEETFAALNVAPLNQHFDKTWISHIQLKAALFYGEACYRYGLELHQKEEIAEEIARLKSGISALSEAKKSSKGAAAQILDTITKLETNLNRNLERAVKENDRVYLMRVPSPSTLPPLPAFSMVKSMPMNEVLDASKERMFSSLVPDSSAKALSRYTEMVDDIIRTQAEKLQQGSELARVRLKEMDLPDSILALEGNFTLPTDLKEDVEAVQICGGPAGLEAELQQLMDLRRVNQELLVQTDELLQKEAREDGQFRSQFGTRWTRPQSSTLTKNLQDRLNRFAANLKQASESDARIERSVREHMALMSILDRRPIESALPTLARPIMSLDANEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFRKEIAKYDNICEDIAQNLEAQEQLLLQIQAQNDEFAAIFNLEDYKASREKSYKQIAAAIAKFREIKENINEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLSFQDGKNTGAYNYPSPPPPEQPTMPGYAHSLPPYGSTQQPPPPYHVAGGPYHPQQAQQPPPSHEYGQPAYPGWRGPYYNNAHAQQPGSLPRPPYTIPAPYPPHHQSGYYKQQ* 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4095416 4103225 + Vvi1g393 Vvi1g393 769593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g393 822 Coils Coil 258 278 - -
Vvi1g393 822 ProSiteProfiles BRO1 domain profile. 13 388 IPR004328 -
Vvi1g393 822 Coils Coil 37 57 - -
Vvi1g393 822 SMART BRO1_2 13 378 IPR004328 -
Vvi1g393 822 Coils Coil 430 450 - -
Vvi1g393 822 Gene3D alix/aip1 like domains 402 682 - -
Vvi1g393 822 Coils Coil 557 577 - -
Vvi1g393 822 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 728 807 - -
Vvi1g393 822 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 5 726 - -
Vvi1g393 822 Coils Coil 606 626 - -
Vvi1g393 822 Pfam BRO1-like domain 14 373 IPR004328 -
Vvi1g393 822 MobiDBLite consensus disorder prediction 722 736 - -
Vvi1g393 822 Gene3D alix/aip1 like domains 8 355 IPR038499 -
Vvi1g393 822 Coils Coil 482 502 - -
Vvi1g393 822 Gene3D alix/aip1 in complex with the ypdl late domain 356 634 - -
Vvi1g393 822 MobiDBLite consensus disorder prediction 713 822 - -
Vvi1g393 822 CDD BRO1_Alix_like_1 14 350 - -
Vvi1g393 822 Pfam ALIX V-shaped domain binding to HIV 410 694 IPR025304 GO:0005515
Vvi1g393 822 CDD V_Alix_like_1 356 692 - -
Vvi1g393 822 PANTHER PCD6 INTERACTING PROTEIN-RELATED 5 726 IPR045251 GO:0071985
Vvi1g393 822 PANTHER PCD6 INTERACTING PROTEIN-RELATED 728 807 IPR045251 GO:0071985
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g393 K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein - vvi:100245656 1494.56
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g393 Blo01g00742 Blo16g00725 . Bda11g00157 Bpe13g01041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0415 Cone9ag0438 . Csa05g02045 . . . . . Bda11g00157 . . Bma01g00446 Bma06g01101 . . Cmo15g00979 . Cma15g00940 . Car15g00882 Cpe13g00383 . Bhi12g00868 . . . . . Lcy10g1452 Cla01g00590 Cam01g0617 Cec01g0607 Cco01g0633 Clacu01g0609 Cmu01g0582 Cre09g1923 Lsi09g00639 . Chy09g00875 Cme09g01408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007554 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36