Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g395 ATGGAGAAAGTGCTGTTGCTGCTACTTCTTTCCCTTGCATCGTCTCCTTCAGTCTTTTCATTCAATGTTCCCGCAATCTTCACGTTTGGAGACTCCATCTTTGATGCTGGAAACAACCATTTTCTCAAGAACTGTACTGCCCAGGCGGATTTCCCCCCTTATGGCTCTAGTTTCTTCCACCACCCCACTGGGAGGTTCACTAATGGAAGAACAGTAGCAGACTTCATTTCCCAGTTCATTGGACTTGATTTACAGAAACCTTACCTTCAGGCACAGATTGAGGTTGTGAACGGAACCCAGAAAAATTATCCTTCCAACGGTATCAACTTTGCTAGTGCTGGCAGTGGGGTATTGAGGGAAACAAATAAGGATATGGGAGTGATACCAATCCAGGACCAGCTACAACAGTTTCAAACACTAGTGCAGCAAAACCAGATTGATTCAAAGCTAGTCCAACAGTCCCTCTTCTTCCTCGAGTCTGGTTCCAATGATGTCTTCAACTACTTCCTCCCTTTTGTCACCCCAACGCTTGATCCAGATGCCTATATGCAAGTCATGTTGACAGAAGTTGTACACTACCTAGACACGATCTATAAGCTCGGTGCTCGCCGCATTGCTGTGTTTGCTCTAGGCCCTGTGGGATGTGTTCCAGCCAGGTCCCTCTTGCCTGGTGCACCCACTGATCGATGTTTTGGGAAGATGAACCACATGGTTAAGCAATACAACCTGGGTTTGGAGAGTTTGGTCAAGGACATTCCCATTAAGTACCCCGGTGCTGTTGGTATCTATGGAGCAGTGTATGATATCGTTCAGCGATTGCGGGCTATTCCTAAACACTATGGGTTTTCGGATGTGTCTAATGCATGCTGTGGAGATGGAATACTTCGTGGAATGTTGCAATGTGGTCAGGAGGGTTACAAGATATGTCCAAACCCTTACGAGTACTTGTTCTGGGATTACTTTCATCCATCAGAGCACACTTACAAGCTCATCTCCAAGGGTTTATGGGGTGGAAAGCAATCCCAAGTTCGGCCAATCAATTTGAGGACTCTGGCCAACTTGACCCTCTCATCAGTTTGA 1080 46.39 MEKVLLLLLLSLASSPSVFSFNVPAIFTFGDSIFDAGNNHFLKNCTAQADFPPYGSSFFHHPTGRFTNGRTVADFISQFIGLDLQKPYLQAQIEVVNGTQKNYPSNGINFASAGSGVLRETNKDMGVIPIQDQLQQFQTLVQQNQIDSKLVQQSLFFLESGSNDVFNYFLPFVTPTLDPDAYMQVMLTEVVHYLDTIYKLGARRIAVFALGPVGCVPARSLLPGAPTDRCFGKMNHMVKQYNLGLESLVKDIPIKYPGAVGIYGAVYDIVQRLRAIPKHYGFSDVSNACCGDGILRGMLQCGQEGYKICPNPYEYLFWDYFHPSEHTYKLISKGLWGGKQSQVRPINLRTLANLTLSSV* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4113894 4115778 + Vvi1g395 Vvi1g395 769595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g395 359 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 18 352 - -
Vvi1g395 359 Gene3D SGNH hydrolase 20 340 IPR036514 -
Vvi1g395 359 Pfam GDSL-like Lipase/Acylhydrolase 26 333 IPR001087 GO:0016788
Vvi1g395 359 PANTHER GDSL ESTERASE/LIPASE 6 18 352 - -
Vvi1g395 359 CDD SGNH_plant_lipase_like 24 338 IPR035669 -
Vvi1g395 359 SUPERFAMILY SGNH hydrolase 109 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g395 - - - vvi:100267979 712.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019289 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4